View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_34 (Length: 417)
Name: NF9133_low_34
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 227 - 402
Target Start/End: Complemental strand, 12065405 - 12065230
Alignment:
| Q |
227 |
ataccagtgcatgttttctaggattgtgacttttttaccttcaatcatgcttcattgatcatcaaacttcaaatttcatccatatccactcaacctagta |
326 |
Q |
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| T |
12065405 |
ataccagtgcatgttttctaggactgtgacctttttaccttcaatcatgtttcattgatcattaaacttcaaatttcatccatatccactcaaccaagta |
12065306 |
T |
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| Q |
327 |
gctttatttcaggaccacggcgcggctacaattgacgccacatcagcctcagaacatcaacttcatctgaccacga |
402 |
Q |
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| T |
12065305 |
gctttatttcaggaccacggcgtggccacaattgacgccacagcagcctcataacatcaacttcatctgaccacga |
12065230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 12065616 - 12065466
Alignment:
| Q |
18 |
aaatgagtgacttcaaagcattatatatctatctctttcttcaattctttgattagaattatagtaattacagttcaatcattattattaacactcacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12065616 |
aaatgagtgacttcaaagcattatatatctatctctttcttcaattctttgattagaattatagtaattacagttcaatcattattattaacactcacta |
12065517 |
T |
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| Q |
118 |
acaaaattgacatttcaacgtcacctttctcttttgtctcacttcacactg |
168 |
Q |
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|||||||||||| ||||||||||||||||| |||||||| ||||||||||| |
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| T |
12065516 |
acaaaattgacacttcaacgtcacctttcttttttgtcttacttcacactg |
12065466 |
T |
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