View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_4 (Length: 663)
Name: NF9133_low_4
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Complemental strand, 3177221 - 3176565
Alignment:
| Q |
1 |
aagtcgagagggagtattatctaacctttcttgcaggtaagttgcattggcaaagtagatgggagactcaacagccaaaatgataaatgcaggaatcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3177221 |
aagtcgagagggagtattatctaacctttcttgcaggtaagttgcattggcaaagtagatgggagactcaacagccaaaatgataaatgcaggaatcctt |
3177122 |
T |
|
| Q |
101 |
atagcttctttatattggattaggttatggaatattggtgtccctggaatgtttcccaaaaccgatgtgtttggcctagagacgtgaagcaggattttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3177121 |
atagcttctttatattggattaggttatggaatattggtgtccctggaatgtttcccaaaaccgatgtgtttggcctagagacgtgaagcaggattttga |
3177022 |
T |
|
| Q |
201 |
agactgatattgccacctaaaatgatttggaaaattcagtcgaagggtaatgaaaatgcttttatagtagttatcattgaagtcaaatatttttaatcgt |
300 |
Q |
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| T |
3177021 |
agactgatattgccacctaaaatgatttggaaaattcagtcgaagggtaatgaacatgcttttatagtagttatcattgaagtcaaatatttttaatcgt |
3176922 |
T |
|
| Q |
301 |
cttacggttatgattgatcgacagtgaaataatttttacattttcggtgcatatgaattaaatcctttgtaaaaacagaaaagacatgtgaattttgaag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3176921 |
cttacggttatgattgatcgacagtgaaataatttttacattttcggtgtatatgaattaaatcctttgtaaaaacagaaaagacatgtgaattttgaag |
3176822 |
T |
|
| Q |
401 |
cttaccgcgactccaaggcctaatggaacggaaataaagagaacaccaaagaaggagcacacacaagctaagaaatcaagcttgtcaaccttccacaatt |
500 |
Q |
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| T |
3176821 |
cttaccgcgactccaaggcctaatggaacggaaataaagagaacaccgaagaaggagcacacacaagctaagaaatcaagcttgtcaaccttccacaatt |
3176722 |
T |
|
| Q |
501 |
tgtatgcggcacggtaatcaattagaccgataacggcagtgatgatgatggctgctaagacaacgtttggtgtgtaatagaacagcggcatgagaaacag |
600 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3176721 |
tgtatgcggcgcggtaatcaattagaccgataacggcagtgatgatgatggctgctaagacaacgtttggtgtgtaatagaacagcggcatgagaaacag |
3176622 |
T |
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| Q |
601 |
aagtgtcacaagaactgctgatgccatgattatatttgatactgctgtctgtgctcc |
657 |
Q |
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| T |
3176621 |
aagtgtcacaagaactgctgatgccatgattatatttgatactgctgtctgtgctcc |
3176565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 399 - 657
Target Start/End: Original strand, 44010594 - 44010852
Alignment:
| Q |
399 |
agcttaccgcgactccaaggcctaatggaacggaaataaagagaacaccaaagaaggagcacacacaagctaagaaatcaagcttgtcaaccttccacaa |
498 |
Q |
| |
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|||||||||||| | |||||||| || || ||||| || ||||| ||||| |||||||||| || || ||||||||||| |||||||||||||||| |
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| T |
44010594 |
agcttaccgcgatactgaggcctaaaggtacagaaatgaacagaacgccaaaaaaggagcacatgcaggccaagaaatcaagtttgtcaaccttccacag |
44010693 |
T |
|
| Q |
499 |
tttgtatgcggcacggtaatcaattagaccgataacggcagtgatgatgatggctgctaagacaacgtttggtgtgtaatagaacagcggcatgagaaac |
598 |
Q |
| |
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||| ||||| || | ||||| ||||| || || || |||| || ||||||| ||||||||| || |||||||| || ||||| || |||||||||||| |
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| T |
44010694 |
tttatatgccgcttgataatctattagtccaatcacagcagcaataatgatggttgctaagactacatttggtgtatagtagaagagaggcatgagaaac |
44010793 |
T |
|
| Q |
599 |
agaagtgtcacaagaactgctgatgccatgattatatttgatactgctgtctgtgctcc |
657 |
Q |
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| ||| ||||| ||||| ||||| |||||||||||||| || || || ||||||||||| |
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| T |
44010794 |
aaaagggtcactagaacagctgaagccatgattatattagaaaccgccgtctgtgctcc |
44010852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 44010154 - 44010347
Alignment:
| Q |
17 |
ttatctaacctttcttgcaggtaagttgcattggcaaagtagatgggagactcaacagccaaaatgataaatgcaggaatccttatagcttctttatatt |
116 |
Q |
| |
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||||||||||| || | |||||||||| ||| || || ||||| |||||||||||||||||||||| ||| | ||||| |||| ||||||||| |||| |
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| T |
44010154 |
ttatctaacctctcacgaaggtaagttgaattagcgaaatagattggagactcaacagccaaaatgagaaacgaaggaactcttaaagcttctttgtatt |
44010253 |
T |
|
| Q |
117 |
ggattaggttatggaatattggtgtccctggaatgtttcccaaaaccgatgtgtttggcctagagacgtgaagcaggattttgaagactgatat |
210 |
Q |
| |
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|| ||| |||||||||||| |||| || || |||||||| || ||| | |||||||| || ||||| ||||| ||||| |||||||||||||| |
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| T |
44010254 |
ggtttatgttatggaatatctgtgttccaggtatgtttcctaacaccaaagtgtttggtctggagacatgaagtaggatcttgaagactgatat |
44010347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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