View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_41 (Length: 367)
Name: NF9133_low_41
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 9695928 - 9696267
Alignment:
| Q |
8 |
ttggtggtgctgaaggaagaagcgtaggagtaactgcaatagaataattttcattattataggttggaatgtaattgggaaactttttagatccaaagct |
107 |
Q |
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| T |
9695928 |
ttggtggtgctgaaggaagaagcgtaggattaactgcaatagaataattttcattattataggttggaatgtaattgggaaactttttagatccaaagct |
9696027 |
T |
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| Q |
108 |
gttttttgatgaacaaacagtttttaggtttatattagcgcatagtttaagtgtagattcagcttcatgatctgtacttaaatcccacctttattattaa |
207 |
Q |
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| T |
9696028 |
gttttgcgatgaacaaacagttgttaggtttatattagcgcatagtttaagtgtagattcagcttcatgatctgtacttaaatcccacctttattattaa |
9696127 |
T |
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| Q |
208 |
tacagacttagtttgttatggtacattcttttgattatcttctaccaattgaatgctgttattcacgtgaagctatgttgtatgttgcatcgtgcttata |
307 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
9696128 |
tacagactcagtttgttatggtacattctgttgattatcttctaccaattgaatgctgttattca-gtgaagttatgttatatgttgcatcgtgcttata |
9696226 |
T |
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| Q |
308 |
tatccaaacacgtagttacttgaaagttgaaactcgcaggt |
348 |
Q |
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| T |
9696227 |
tatccaaacacgtagttacttgaaagttgaaactcgcaggt |
9696267 |
T |
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