View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_43 (Length: 364)
Name: NF9133_low_43
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 32955888 - 32955629
Alignment:
| Q |
19 |
gtttcatggatgattcagatgcagaatcagaaaatggcattcctaatttcctttcttggagactcaacacaagtcttgttcacgattacacaagatgaag |
118 |
Q |
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| T |
32955888 |
gtttcatggatgattcagatgcagaatcagaaaatggcattcctaatttcctttcttggagactcaacacaagtcttgttcacgattacacaagatgaag |
32955789 |
T |
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| Q |
119 |
cattggaattagaagttacgatgatattgatgatgatgacgacataagcttaatattcctaagataatagaacagaaagaagacaaaaaatgatgatgta |
218 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
32955788 |
cattggaattagaagttatgatgat---------------gacataagcttaatattcctacgttaatagaacagaaagaagacaaaaaatgatgatgta |
32955704 |
T |
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| Q |
219 |
gatgtaggtgtacgacaatgttttacgatgtagatgtttttgattgtgatggttatgttatggtctcgtcaacgg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955703 |
gatgtaggtgtacgacaatgttttacgatgtagatgtttttgattgtgatggttatgttatggtctcgtcaacgg |
32955629 |
T |
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