View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_46 (Length: 350)
Name: NF9133_low_46
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 19912154 - 19911840
Alignment:
| Q |
18 |
aaaattatgttagtatagattggtctatgagaaatcaaaatgctagtgtttagatgagatgacatatgtgtattgtcctcttacattgtcgaggaaagac |
117 |
Q |
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| T |
19912154 |
aaaattatgttagtatagattggtctatgagaaatcaaaatgctagtgtttagatgagatgacatatgtgtattgtcctcttacattgtcgaggaaagac |
19912055 |
T |
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| Q |
118 |
tatggttctcaaatagttagctcacagtttcattttcactgatttggaagatcttggaaagcattcaaggacaagattcgactcaaacgcactggctcta |
217 |
Q |
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| T |
19912054 |
tatggttctcaaatagttagctcacagtttcattttcactgatttggaagatcttggaaagcattcaaggacaagattcgactcaaacgcactggctctg |
19911955 |
T |
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| Q |
218 |
cttggacatcaacgattcatattccaacttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcggtcgtcgcaactcagtccgaat |
317 |
Q |
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| T |
19911954 |
cttggacatcaacgattcatattccaacttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcggtcgtcgcaactcagtccgaat |
19911855 |
T |
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| Q |
318 |
ccaaactcaccacga |
332 |
Q |
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| T |
19911854 |
ccaaactcaccacga |
19911840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 146 - 326
Target Start/End: Original strand, 29404786 - 29404966
Alignment:
| Q |
146 |
ttcattttcactgatttggaagatcttggaaagcattcaaggacaagattcgactcaaacgcactggctctacttggacatcaacgattcatattccaac |
245 |
Q |
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| T |
29404786 |
ttcattttcattgatatggaagatcttggaaagcctttaaagacaagcttcggctaaagcgtgctggctctgcttggacatcatcaattcccattccaac |
29404885 |
T |
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| Q |
246 |
ttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcggtcgtcgcaactcagtccgaatccaaactca |
326 |
Q |
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| T |
29404886 |
atccgacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaactcagttcgagtccaaactca |
29404966 |
T |
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