View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_low_48 (Length: 346)

Name: NF9133_low_48
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_low_48
NF9133_low_48
[»] chr2 (17 HSPs)
chr2 (14-271)||(44691937-44692194)
chr2 (272-330)||(3155003-3155061)
chr2 (274-330)||(6964794-6964850)
chr2 (270-330)||(7162675-7162735)
chr2 (271-330)||(34693146-34693205)
chr2 (271-330)||(34715558-34715617)
chr2 (272-330)||(4505679-4505737)
chr2 (272-330)||(12337697-12337755)
chr2 (272-330)||(3952899-3952957)
chr2 (273-330)||(40635963-40636020)
chr2 (272-330)||(3399509-3399567)
chr2 (144-255)||(40920152-40920263)
chr2 (276-330)||(8907337-8907391)
chr2 (134-264)||(44514429-44514559)
chr2 (274-319)||(5952949-5952993)
chr2 (278-324)||(27506989-27507035)
chr2 (272-330)||(41213936-41213994)
[»] chr8 (9 HSPs)
chr8 (271-330)||(2952480-2952539)
chr8 (272-330)||(5861003-5861061)
chr8 (272-330)||(20003884-20003942)
chr8 (271-330)||(30883109-30883168)
chr8 (272-330)||(3048781-3048839)
chr8 (274-330)||(41878167-41878223)
chr8 (272-330)||(37430309-37430367)
chr8 (278-324)||(42600590-42600636)
chr8 (282-330)||(45472201-45472249)
[»] chr3 (17 HSPs)
chr3 (271-330)||(38681355-38681414)
chr3 (272-330)||(36716283-36716341)
chr3 (273-330)||(3954860-3954917)
chr3 (272-330)||(27078826-27078884)
chr3 (272-330)||(27084623-27084681)
chr3 (272-330)||(50258742-50258800)
chr3 (272-330)||(13795187-13795245)
chr3 (272-330)||(42098698-42098756)
chr3 (272-330)||(47467582-47467639)
chr3 (280-330)||(54619461-54619511)
chr3 (286-330)||(36605860-36605904)
chr3 (272-319)||(29620618-29620665)
chr3 (272-330)||(21582668-21582726)
chr3 (272-330)||(53149465-53149523)
chr3 (272-330)||(18372033-18372090)
chr3 (281-330)||(1148362-1148411)
chr3 (281-325)||(48156951-48156995)
[»] scaffold0070 (1 HSPs)
scaffold0070 (272-330)||(1011-1069)
[»] chr7 (6 HSPs)
chr7 (272-330)||(12596437-12596495)
chr7 (272-330)||(18777026-18777084)
chr7 (273-330)||(28749582-28749639)
chr7 (272-330)||(10955378-10955436)
chr7 (11-65)||(6230965-6231019)
chr7 (80-124)||(37607123-37607167)
[»] chr5 (13 HSPs)
chr5 (272-330)||(15480237-15480295)
chr5 (272-330)||(19523093-19523151)
chr5 (272-330)||(31881598-31881656)
chr5 (26-251)||(29300601-29300827)
chr5 (275-330)||(36188027-36188082)
chr5 (272-330)||(30853266-30853324)
chr5 (276-330)||(34756622-34756676)
chr5 (272-330)||(22987475-22987534)
chr5 (272-330)||(2274798-2274856)
chr5 (272-330)||(16592853-16592911)
chr5 (143-256)||(40754641-40754754)
chr5 (272-324)||(16199040-16199092)
chr5 (288-324)||(16799570-16799606)
[»] chr4 (21 HSPs)
chr4 (272-330)||(10431450-10431508)
chr4 (272-330)||(55255080-55255138)
chr4 (272-330)||(47127981-47128039)
chr4 (272-329)||(5128992-5129049)
chr4 (275-330)||(17679220-17679275)
chr4 (272-326)||(32915297-32915351)
chr4 (272-330)||(37514558-37514616)
chr4 (272-330)||(45560712-45560770)
chr4 (287-330)||(38209849-38209892)
chr4 (275-330)||(48208453-48208508)
chr4 (288-330)||(1105447-1105489)
chr4 (274-330)||(13459786-13459842)
chr4 (144-256)||(13853374-13853486)
chr4 (291-330)||(9579477-9579516)
chr4 (291-330)||(9585172-9585211)
chr4 (272-312)||(10978144-10978184)
chr4 (287-330)||(34769541-34769584)
chr4 (220-259)||(55352528-55352567)
chr4 (275-309)||(23510929-23510963)
chr4 (281-330)||(27596647-27596696)
chr4 (281-330)||(54779450-54779499)
[»] chr1 (17 HSPs)
chr1 (272-330)||(14146205-14146263)
chr1 (272-330)||(41697287-41697345)
chr1 (272-330)||(44655539-44655597)
chr1 (271-330)||(27906956-27907015)
chr1 (152-264)||(6494395-6494507)
chr1 (271-330)||(3406322-3406381)
chr1 (271-330)||(3440439-3440498)
chr1 (271-330)||(16139959-16140018)
chr1 (276-330)||(6888473-6888527)
chr1 (280-330)||(6771704-6771754)
chr1 (272-318)||(50880568-50880614)
chr1 (288-330)||(5027982-5028024)
chr1 (272-330)||(10912102-10912160)
chr1 (278-324)||(13913730-13913776)
chr1 (147-253)||(40196690-40196796)
chr1 (278-324)||(40502038-40502084)
chr1 (13-98)||(29978919-29979004)
[»] chr6 (13 HSPs)
chr6 (272-329)||(27314773-27314830)
chr6 (271-330)||(13727657-13727716)
chr6 (271-330)||(19741231-19741290)
chr6 (275-330)||(21280336-21280391)
chr6 (272-330)||(21479284-21479342)
chr6 (274-330)||(23070897-23070953)
chr6 (272-330)||(12083648-12083706)
chr6 (272-330)||(24711150-24711208)
chr6 (272-329)||(27579084-27579141)
chr6 (271-330)||(1156025-1156084)
chr6 (272-330)||(30832675-30832732)
chr6 (272-330)||(33773900-33773957)
chr6 (11-65)||(381957-382011)
[»] scaffold0001 (1 HSPs)
scaffold0001 (272-317)||(181435-181480)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 44691937 - 44692194
Alignment:
Q  14 ttctccttaattcggtgattaatgctatccctattttttatctctcatttttgaagatgctcgataaagtgtggaggaagttggtgaggatccaaagaga 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44691937 ttctccttaattcggtgattaatgctatccctattttctatctctcatttttgaagatgcccgataaagtgtggaggaagttggtgaggatccaaagaga 44692036  T
Q  114 atttctttgggaggggtgatggggggtcgtaaaattagttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692037 atttctttgggaggggtgatggggggtcgtaaaattagttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacg 44692136  T
Q  214 ttagggtggtgaatcttagtcttttggctaagtggaggtggaggttattgactgagga 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692137 ttagggtggtgaatcttagtcttttggctaagtggaggtggaggttattgactgagga 44692194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 3155003 - 3155061
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  3155003 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 3155061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 6964794 - 6964850
Alignment:
Q  274 ggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  6964794 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 6964850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 7162675 - 7162735
Alignment:
Q  270 gacaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  7162675 gacaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcccacaaggatg 7162735  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 34693146 - 34693205
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  34693146 acaggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatg 34693205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 34715558 - 34715617
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  34715558 acaggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatg 34715617  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 4505679 - 4505737
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||    
T  4505679 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaatgatg 4505737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 12337755 - 12337697
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  12337755 caggggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatg 12337697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 3952899 - 3952957
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  3952899 caggggtgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 3952957  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 40635963 - 40636020
Alignment:
Q  273 aggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||    
T  40635963 aggggcgtccctaagggggtgcaaacagctcaaacgagttgggcctccctcaaggatg 40636020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 3399509 - 3399567
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| ||| ||||||||||||||||||||||| | | |||||||||||||||    
T  3399509 caggggcgtccttgagggggtgcaaacagctcaaacgagttggacctccctcaaggatg 3399567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 40920152 - 40920263
Alignment:
Q  144 aaaattagttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacgttagggtggtgaatcttagtcttttggcta 243  Q
    ||||||||||||||||| |||||  | || |||||||| |||| | | || ||||| || ||||||||  | |||||||||||| |||| ||||||||||    
T  40920152 aaaattagttgggtgaaatggagtacggtgtgtcaaccgaaggaggaggggggtctaggtgtgagggatataagggtggtgaatattagccttttggcta 40920251  T
Q  244 agtggaggtgga 255  Q
    | ||||| ||||    
T  40920252 aatggagatgga 40920263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 8907391 - 8907337
Alignment:
Q  276 ggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| |||||||||||||||||||| |||| | |||||||||| ||||    
T  8907391 ggcgtccctgagggggtgcaaacagctcaaacaagctggacctccctcaaagatg 8907337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 44514559 - 44514429
Alignment:
Q  134 ggggggtcgtaaaattagttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacgttagggtggtgaatcttagt 233  Q
    |||||| ||||| ||||||| ||| ||||||||| | || || ||||| |||| ||| ||||| ||||  ||| ||||  |||||||||||||| |||||    
T  44514559 gggggggcgtaagattagttaggttaagtggagaacggtgtgccaaccgaaggagaaaggtgggcttgatgtgggggatattagggtggtgaatgttagt 44514460  T
Q  234 cttttggctaagtggaggtggaggttattga 264  Q
     | ||||| || ||||| |||||||| ||||    
T  44514459 ttgttggccaaatggagatggaggttgttga 44514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 5952993 - 5952949
Alignment:
Q  274 ggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctc 319  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  5952993 ggggcgtccctga-ggggtgcaaacagctcaaacgagctgggcctc 5952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 27507035 - 27506989
Alignment:
Q  278 cgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctca 324  Q
    ||||||||| ||||||||||||||||||  ||||| |||||||||||    
T  27507035 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctca 27506989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 41213994 - 41213936
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||| ||| ||| ||||||||||||||| ||||||||| || ||||||| ||||||    
T  41213994 caggggcatccttgagggggtgcaaacagcttaaacgagctgggtctccctcgaggatg 41213936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 2952539 - 2952480
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  2952539 acaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 2952480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 5861061 - 5861003
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  5861061 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 5861003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 20003942 - 20003884
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  20003942 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 20003884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 30883109 - 30883168
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  30883109 acaggggcgtccctgagtgggtgcaaacagctcaaacgagctgggcctccctcaaggatg 30883168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 3048839 - 3048781
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  3048839 caggggcgtttctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 3048781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 41878167 - 41878223
Alignment:
Q  274 ggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||| ||| ||||||||||||||||||||||| |  ||||||||||||||||    
T  41878167 ggggcgtccttgagggggtgcaaacagctcaaacgagttgagcctccctcaaggatg 41878223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 37430367 - 37430309
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| ||| ||||||||||||||||||||||| | ||||| ||| |||||||    
T  37430367 caggggcgtccttgagggggtgcaaacagctcaaacgagttgggccttccttaaggatg 37430309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 42600590 - 42600636
Alignment:
Q  278 cgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctca 324  Q
    ||||||||| ||||||||||||||||||  ||||| |||||||||||    
T  42600590 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctca 42600636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 45472201 - 45472249
Alignment:
Q  282 cctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||| |||||||||||||||||| |||||| |||| ||| ||||||||    
T  45472201 cctgagggggtgcaaacagctcaaccgagctgggccacccccaaggatg 45472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 38681414 - 38681355
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  38681414 acaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 38681355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 36716341 - 36716283
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  36716341 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 36716283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 3954917 - 3954860
Alignment:
Q  273 aggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  3954917 aggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 3954860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 27078884 - 27078826
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  27078884 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 27078826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 27084681 - 27084623
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  27084681 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 27084623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 50258800 - 50258742
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  50258800 caggggcgtccctgagggggtgcaaacagctcaaatgagctgggcctccctcaaggatg 50258742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 13795187 - 13795245
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||    
T  13795187 caggggcgtccttgagggcgtgcaaacagctcaaacgagctgggcctccctcaaggatg 13795245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 42098698 - 42098756
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||    
T  42098698 caggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctcccacaaggatg 42098756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 47467582 - 47467639
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  47467582 caggggcgtccctga-ggggtgcaaacagctcaaacgagctgagcctccctcaaggatg 47467639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 54619511 - 54619461
Alignment:
Q  280 tccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  54619511 tccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 54619461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 36605860 - 36605904
Alignment:
Q  286 aaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  36605860 aaggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 36605904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 29620665 - 29620618
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctc 319  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  29620665 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 29620618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 21582668 - 21582726
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||| |||| ||||||||||||||||||||||||| ||| ||||| |||||||    
T  21582668 caggggcgtctctgagggggtgcaaacagctcaaacgagctgggcatcccttaaggatg 21582726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 53149523 - 53149465
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||| | ||||||||||||||||||||||||| |||||||  ||||||||    
T  53149523 caggggcgtccctcagggggtgcaaacagctcaaacgagctgggcctccaccaaggatg 53149465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 18372033 - 18372090
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||| |||| ||||||||||||| ||||||||||| || ||||||||||||||    
T  18372033 caggggcgtctctga-ggggtgcaaacagttcaaacgagctggggctccctcaaggatg 18372090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 1148411 - 1148362
Alignment:
Q  281 ccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||| ||||||| ||||||||||||||||| |||||||| ||||||||    
T  1148411 ccctgagggggtgcgaacagctcaaacgagctgggcctcccccaaggatg 1148362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 48156951 - 48156995
Alignment:
Q  281 ccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaa 325  Q
    |||||| ||||||||||||||||||  ||||| ||||||||||||    
T  48156951 ccctgagggggtgcaaacagctcaacagagctgggcctccctcaa 48156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 1011 - 1069
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  1011 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 1069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 12596495 - 12596437
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  12596495 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 12596437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 18777084 - 18777026
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  18777084 caggggcgtccctgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatg 18777026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 28749582 - 28749639
Alignment:
Q  273 aggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  28749582 aggggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 28749639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 10955378 - 10955436
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| ||| |||||||||| |||||||||||| | |||||||||||||||||    
T  10955378 caggggcgtccttgagggggtgcaaatagctcaaacgagttgggcctccctcaaggatg 10955436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 6230965 - 6231019
Alignment:
Q  11 ttattctccttaattcggtgattaatgctatccctattttttatctctcattttt 65  Q
    |||||||||||||| ||||| | ||||||||||| ||||||||||| || |||||    
T  6230965 ttattctccttaatgcggtgttgaatgctatcccaattttttatctttccttttt 6231019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 37607123 - 37607167
Alignment:
Q  80 aagtgtggaggaagttggtgaggatccaaagagaatttctttggg 124  Q
    |||||||||||| | |||| || ||||||||||||||||||||||    
T  37607123 aagtgtggaggagggtggttagaatccaaagagaatttctttggg 37607167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 15480295 - 15480237
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  15480295 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 15480237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 19523093 - 19523151
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  19523093 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 19523151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 31881656 - 31881598
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  31881656 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 31881598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 29300601 - 29300827
Alignment:
Q  26 cggtgattaatgctatccctattttttatctctcatttttgaagatgctcgataaagtgtggaggaagttggtgaggatccaaagagaatttctttggga 125  Q
    |||| |||||||  || |||||||| || ||||| |||||||||||||  |  |  ||||||| ||| |||||||| |||||||||||| |||||||| |    
T  29300601 cggtcattaatgagattcctattttctacctctcttttttgaagatgccaggaattgtgtggaagaaattggtgagaatccaaagagaaattctttgg-a 29300699  T
Q  126 ggggtgatg--gggggtcgtaaaattagttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacgttagggtggt 223  Q
    | |||| ||  | ||||||||||||||  ||||||||||||||  | || |||||||  || ||||  || |||||||| ||||||||  |||| |||||    
T  29300700 gaggtgttgaagtgggtcgtaaaattaactgggtgaagtggaggacggtgtgtcaactgaaagggatgggcggtcttggagtgagggatattagagtggt 29300799  T
Q  224 gaatcttagtcttttggctaagtggagg 251  Q
    |||| | ||| | |||||||||||||||    
T  29300800 gaatttaagtttgttggctaagtggagg 29300827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 36188082 - 36188027
Alignment:
Q  275 gggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  36188082 gggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatg 36188027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 30853266 - 30853324
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||    
T  30853266 caggggcgtcccttagggggtgcaaacagctcaaacgagctgggcctccttcaaggatg 30853324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 34756676 - 34756622
Alignment:
Q  276 ggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  34756676 ggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 34756622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 22987534 - 22987475
Alignment:
Q  272 caggggcgtccctgaagggg-tgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||    
T  22987534 caggggcgtccctgaggggggtgcaaacagctcaaacgagctgggcctccctcaaagatg 22987475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 2274798 - 2274856
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||| ||||| ||||||||||||||||||| ||| | |||||||||||||||||    
T  2274798 caggggcgttcctgagggggtgcaaacagctcaaatgagttgggcctccctcaaggatg 2274856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 16592911 - 16592853
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| | ||||| | |||||||    
T  16592911 caggggcgtccctgagggggtgcaaacagctcaaacgagctggacctcctttaaggatg 16592853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 40754754 - 40754641
Alignment:
Q  143 taaaattagttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacgttagggtggtgaatcttagtcttttggct 242  Q
    ||||||||||||||| ||||||   || || |||||| ||||| |||| || ||||||||||| ||||| ||||||||||| ||| | ||| | |||||     
T  40754754 taaaattagttgggtaaagtgggactcggtgtgtcaatcaaagaggaatggaggtcttggggttagggatgttagggtggttaatgtgagtttgttggcg 40754655  T
Q  243 aagtggaggtggag 256  Q
    || ||||| |||||    
T  40754654 aaatggagatggag 40754641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 16199092 - 16199040
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctca 324  Q
    |||| ||| |||||| ||||||||||||||||||  ||||| |||||||||||    
T  16199092 caggcgcggccctgagggggtgcaaacagctcaacagagctgggcctccctca 16199040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 16799606 - 16799570
Alignment:
Q  288 ggggtgcaaacagctcaaacgagctaggcctccctca 324  Q
    ||||||||||||||||||  |||||||||||||||||    
T  16799606 ggggtgcaaacagctcaatagagctaggcctccctca 16799570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 10431508 - 10431450
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  10431508 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 10431450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 55255080 - 55255138
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  55255080 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 55255138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 47127981 - 47128039
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  47127981 caggggcgtccctgagggggtgcaaacagcccaaacgagctgggcctccctcaaggatg 47128039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 5129049 - 5128992
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggat 329  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  5129049 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 5128992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 17679220 - 17679275
Alignment:
Q  275 gggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  17679220 gggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatg 17679275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 32915297 - 32915351
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaag 326  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  32915297 caggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaag 32915351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 37514558 - 37514616
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  37514558 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcctccaaggatg 37514616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 45560770 - 45560712
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||    
T  45560770 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatg 45560712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 38209892 - 38209849
Alignment:
Q  287 aggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  38209892 aggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 38209849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 48208453 - 48208508
Alignment:
Q  275 gggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  48208453 gggcatccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatg 48208508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 1105447 - 1105489
Alignment:
Q  288 ggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  1105447 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 1105489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 13459786 - 13459842
Alignment:
Q  274 ggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||| ||||| |||||||||||||||||||||||||  |||||||| |||||||    
T  13459786 ggggcgttcctgagggggtgcaaacagctcaaacgagctgagcctcccttaaggatg 13459842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 13853374 - 13853486
Alignment:
Q  144 aaaattagttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacgttagggtggtgaatcttagtcttttggcta 243  Q
    |||||||||||||| || |||   || || |||||||||||| |||| || ||||||||||| ||||||||||||||||| ||| | ||| | ||||| |    
T  13853374 aaaattagttgggtaaaatgggactcggtgtgtcaaccaaagaggaatggaggtcttggggttagggacgttagggtggtaaatgtgagtttgttggcga 13853473  T
Q  244 agtggaggtggag 256  Q
    | ||||| |||||    
T  13853474 aatggagatggag 13853486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 9579516 - 9579477
Alignment:
Q  291 gtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  9579516 gtgcaaacagctcaaacgagctgggcctccctcaaggatg 9579477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 9585211 - 9585172
Alignment:
Q  291 gtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  9585211 gtgcaaacagctcaaacgagctgggcctccctcaaggatg 9585172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 10978144 - 10978184
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagct 312  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  10978144 caggggcgtccctgagagggtgcaaacagctcaaacgagct 10978184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 34769584 - 34769541
Alignment:
Q  287 aggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| |||||||||||| | |||||||||||||||||    
T  34769584 aggggtgcaaatagctcaaacgagttgggcctccctcaaggatg 34769541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 55352528 - 55352567
Alignment:
Q  220 tggtgaatcttagtcttttggctaagtggaggtggaggtt 259  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  55352528 tggtaaatcttagtcttttggccaagtggaggtggaggtt 55352567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 23510963 - 23510929
Alignment:
Q  275 gggcgtccctgaaggggtgcaaacagctcaaacga 309  Q
    |||||||||||| ||||||||||||||||||||||    
T  23510963 gggcgtccctgagggggtgcaaacagctcaaacga 23510929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 27596696 - 27596647
Alignment:
Q  281 ccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||| ||||||| ||||||||||||||||| |||||||| | ||||||    
T  27596696 ccctgagggggtgcgaacagctcaaacgagctgggcctcccccgaggatg 27596647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 54779450 - 54779499
Alignment:
Q  281 ccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||| || ||||||||||||||| |||||| |||||||| ||||||||    
T  54779450 ccctgagggagtgcaaacagctcaaccgagctgggcctcccccaaggatg 54779499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 14146205 - 14146263
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  14146205 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 14146263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 41697345 - 41697287
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  41697345 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 41697287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 44655539 - 44655597
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  44655539 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 44655597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 27907015 - 27906956
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  27907015 acaggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 27906956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 6494395 - 6494507
Alignment:
Q  152 ttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacgttagggtggtgaatcttagtcttttggctaagtggagg 251  Q
    |||||||||||||||||| || || ||||||||||  |  ||||||||||||||||| ||  | ||||| || ||| ||||| | |||||||| ||||||    
T  6494395 ttgggtgaagtggagatcggtgtgccaaccaaaggataggggtggtcttggggtgagagatataagggttgttaatgttagtttgttggctaaatggagg 6494494  T
Q  252 tggaggttattga 264  Q
    |||||||||||||    
T  6494495 tggaggttattga 6494507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 3406322 - 3406381
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  3406322 acaggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatg 3406381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 3440498 - 3440439
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  3440498 acaggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatg 3440439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 16139959 - 16140018
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||    
T  16139959 acaggggcgtccttgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatg 16140018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 6888473 - 6888527
Alignment:
Q  276 ggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  6888473 ggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatg 6888527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 6771704 - 6771754
Alignment:
Q  280 tccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  6771704 tccctgagggggtgcaaacagctcaaacgagctgggcctcccttaaggatg 6771754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 50880568 - 50880614
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcct 318  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||    
T  50880568 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcct 50880614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 5028024 - 5027982
Alignment:
Q  288 ggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||||| |||||| |||||||| ||||||||    
T  5028024 ggggtgcaaacagctcaaccgagctgggcctcccccaaggatg 5027982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 10912160 - 10912102
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||| || |||||| ||||||| ||||||||||||||||| |||||||  ||||||||    
T  10912160 cagggccggccctgagggggtgcgaacagctcaaacgagctgggcctcctccaaggatg 10912102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 13913776 - 13913730
Alignment:
Q  278 cgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctca 324  Q
    ||||||||| ||||||||||||||||||  ||||| |||||||||||    
T  13913776 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctca 13913730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 40196796 - 40196690
Alignment:
Q  147 attagttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacgttagggtggtgaatcttagtcttttggctaagt 246  Q
    ||||||||||| |||||||  ||||||||||||| ||||  |||||||||||| || || |  || ||||  ||||| ||| | ||||||||||| ||||    
T  40196796 attagttgggttaagtggaattcagtttgtcaacaaaagaagaacggtggtctaggagttaaagatgttatagtggttaatgtgagtcttttggcgaagt 40196697  T
Q  247 ggaggtg 253  Q
    || ||||    
T  40196696 ggcggtg 40196690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 40502084 - 40502038
Alignment:
Q  278 cgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctca 324  Q
    ||||||||| ||||||||||||||||||  ||||| |||||||||||    
T  40502084 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctca 40502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 29979004 - 29978919
Alignment:
Q  13 attctccttaattcggtgattaatgctatccctattttttatctctcatttttgaagatgctcgataaagtgtggaggaagttggt 98  Q
    |||||||||||||||||| | ||||||||||| || |||||||| || || ||||  ||||| |  || |||||||||| ||||||    
T  29979004 attctccttaattcggtgttgaatgctatccccatcttttatctatccttcttgagaatgctggtgaaggtgtggaggaggttggt 29978919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 27314830 - 27314773
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggat 329  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  27314830 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 27314773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 13727716 - 13727657
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||    
T  13727716 acaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatg 13727657  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 19741290 - 19741231
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  19741290 acagggacgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 19741231  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 21280336 - 21280391
Alignment:
Q  275 gggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  21280336 gggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 21280391  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 21479284 - 21479342
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  21479284 caggggcgtccctgagggggtgcaaacagctaaaacgagctgggcctccctcaaggatg 21479342  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 23070953 - 23070897
Alignment:
Q  274 ggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  23070953 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 23070897  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 12083706 - 12083648
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  12083706 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggccttcctcaaggatg 12083648  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 24711208 - 24711150
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||||||| ||||||||    
T  24711208 caggggcgtccctgagggggtgcaaacagctcaaacaagctgggcctcccccaaggatg 24711150  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 27579141 - 27579084
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggat 329  Q
    ||||||||||||| | ||||||||| ||||||||||||||| ||||||||||||||||    
T  27579141 caggggcgtccctaagggggtgcaaccagctcaaacgagctgggcctccctcaaggat 27579084  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 1156084 - 1156025
Alignment:
Q  271 acaggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    |||||||||  ||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  1156084 acaggggcgctcctgagggggtgcaaacagctcaaacgagctaggtctcccttaaggatg 1156025  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 30832732 - 30832675
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  30832732 caggggcgtccttga-ggggtgcaaacagctcaaatgagctgggcctccctcaaggatg 30832675  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 33773900 - 33773957
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcctccctcaaggatg 330  Q
    ||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  33773900 caggggcgtccctgagggggtgcaaaca-ctcaaatgagctgggcctccctcaaggatg 33773957  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 382011 - 381957
Alignment:
Q  11 ttattctccttaattcggtgattaatgctatccctattttttatctctcattttt 65  Q
    |||||||||||||| ||||| | ||||||||||| ||||||||||| || |||||    
T  382011 ttattctccttaatgcggtgttgaatgctatcccaattttttatctttccttttt 381957  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 181435 - 181480
Alignment:
Q  272 caggggcgtccctgaaggggtgcaaacagctcaaacgagctaggcc 317  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  181435 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcc 181480  T

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