View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9133_low_49 (Length: 346)
Name: NF9133_low_49
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_49 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 7490669 - 7490988
Alignment:
| Q |
13 |
attattctagatagttgttgatttaatttctaacagaattgtgcttttaaattcaatgttgaatgcagtttcgattgtctacttaacatatttgaagatg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7490669 |
attattctagatagttgttgatttaatttctaacagaattgtgcttttaaattcattgttgaatgcagtttcgattgtctacttaacatatttgaagatg |
7490768 |
T |
|
| Q |
113 |
tcaagaaaggtggtgaacttgattgttgcactccaaaggaatttcctttc-ggggtgccatggggtgaggaaaataagttgggtgaa-tggaaaagggtg |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
7490769 |
tcaagaaaggtggtgaaagtgattgttgcactccaaaggaatttcctttcgggggtgccatgggctgaggaaaataagttgggtgaagtggaaaagggtg |
7490868 |
T |
|
| Q |
211 |
cgcaaccaagcgaagaagggaagggaagaagtcaatcaaaaagaggcaaaatatgatattttgtttagatatagtatagacacacacatataaaataaga |
310 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| || |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7490869 |
cgcaaccaa-cgaagaagggaagggaaaaagtcagtccaaaagaaccaaaacatgatattttgtttagatatagtatagacatacacatataaaataaga |
7490967 |
T |
|
| Q |
311 |
tttttaagccacatgttattt |
331 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
7490968 |
tttttatgccacatgttattt |
7490988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 8786950 - 8786996
Alignment:
| Q |
242 |
tcaatcaaaaagaggcaaaatatgatattttgtttagatatagtata |
288 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
8786950 |
tcaatccaaaataggcaaaatatgatattttctttatatatagtata |
8786996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 15641 - 15592
Alignment:
| Q |
239 |
aagtcaatcaaaaagaggcaaaatatgatattttgtttagatatagtata |
288 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||| |||| |||||||||| |
|
|
| T |
15641 |
aagtcaatcaaaaagagtcaaaacatgttattttctttatatatagtata |
15592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University