View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_50 (Length: 314)
Name: NF9133_low_50
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 260557 - 260829
Alignment:
| Q |
16 |
agataaatttggttgtttttattgcatgattgaataataattcttgtgaagggtaaacatgtta-ggatcacatcaatttagcataaatttgagaggtta |
114 |
Q |
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| T |
260557 |
agataaatttggttgtttttattgcatgattgaataataattcttgtgaagggtaaacatgttaaggatcacatcaatttagcataaatttgagaggtta |
260656 |
T |
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| Q |
115 |
gaactccaagaacatatttttatcctataggcagcctaannnnnnnnnnnnnnnnnnnngattgggagaaaagcgaaaaaaggtgatacctgttgcaggg |
214 |
Q |
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||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
260657 |
gaactccaagaacatatttctatcctacaggcagcctaa---------aataataataagattgggagaaaagcgaaaaaaggtgatacctgttgcaggg |
260747 |
T |
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| Q |
215 |
agtgtcaggggttggaatgtgggtaagatcatttgataaggagtggagatgatgacacgaagttcgagcatcgacccaacca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260748 |
agtgtcaggggttggaatgtgggtaagatcatttgataaggagtggagatgatgacacgaagttcgagcatcgacccaacca |
260829 |
T |
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