View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_52 (Length: 314)
Name: NF9133_low_52
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 112 - 302
Target Start/End: Complemental strand, 42347737 - 42347547
Alignment:
| Q |
112 |
gatcgatttcaatttttctttgccgaccctttaatcatccaagtaagccccttctaactgttatctttcgtctaatcttttccactttcattttaattat |
211 |
Q |
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| T |
42347737 |
gatcgatttcaatttttctttgccgaccctttaatcatccaagtaagccccttctaactgttatctttcgtctaatcttttccactttcattttaattat |
42347638 |
T |
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| Q |
212 |
tcaattcaatgctaacttcacatcctctgcataaaaaattggtaaaattctcatctttttaatgacccagatactatttcactcacatgat |
302 |
Q |
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| T |
42347637 |
tcaattcaatgctaacttcacatcctctgcataaaaaattggtaaaattctcatctttttaatgacccagatactatttcactcacatgat |
42347547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 42347871 - 42347808
Alignment:
| Q |
19 |
aatttaactttccacacagccaaattttcccttcgtctgaggagagagccgcttcttcttcttc |
82 |
Q |
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| T |
42347871 |
aatttaactttccacacagccaaattttcccttcgtctgaggagagagccgcttcttcttcttc |
42347808 |
T |
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