View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_low_57 (Length: 298)

Name: NF9133_low_57
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_low_57
NF9133_low_57
[»] chr8 (1 HSPs)
chr8 (13-298)||(27547712-27547998)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 27547712 - 27547998
Alignment:
Q  13 gtttcgtgtttgattttgcaatttaactgaagattatcactgttgttgcaatttccccg-taaaaacgtgtaatcttattgcaattgaactgaaaatata 111  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||    
T  27547712 gtttcgtgtttgattttgcaattgaactgaagattatcgctgttgttgcaattccccccctaaaaacgtgcaatcttattgcaattgaactgaaaatata 27547811  T
Q  112 tcttgttttgtgtttattcttattatgcactatgtacaaacatctaagaatttagctgggaagtggcaactgtagtacaagttccgtgtgtgtatgatag 211  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  27547812 tcttgttttgtgtttaatcttattatgcactatgtacagacatccaaggatttagcttggaagtggcaactgtagtacaagttgcgtgtgtgtatgatag 27547911  T
Q  212 atatgattttgagaacactgtttagattgaaagttgagataacaaatgaagtaagatcgagaaagcacagacattgacacgtcgaca 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  27547912 atatgattttgagaacactgtttagattgaaagttgagataacaaatgaagtaagatcgagaaagcacagctactgacacgtcgaca 27547998  T

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