View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9133_low_6 (Length: 628)
Name: NF9133_low_6
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Complemental strand, 40313650 - 40313038
Alignment:
| Q |
1 |
tgacccatccattagatggaggcttcgacccacttagagtcatcccacaacgttgcttaaaaatcacactattagctttatcaacaagattataatttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40313650 |
tgacccatccattagatggaggcttcgacccacttagagtcatcccacaacgttgcttaaaaaccacactattagctttatcaacaagattataatttat |
40313551 |
T |
|
| Q |
101 |
gataagattcaagacatgatgagcaagattataacttcattccaccatgaggagaatgcacctacttagcttagtttatagagataacttgtgtaacaag |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40313550 |
gataagattcaagacatggagagcaagattataacttcattccaccatgaggagaatgcacctacttagcttagtttatagagataacttgtgtaacaag |
40313451 |
T |
|
| Q |
201 |
ttatcaagttagtttgttctttgtattctatggttgatgcctcaccatagttatcatgtggcttactactataaatatgatattcatattttccctcttc |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
40313450 |
ttatcaagttactttgttctttgcattctatggttgatgcctcaccatagttatcatgtggcttactactat---tatgatat-catattttccctcttc |
40313355 |
T |
|
| Q |
301 |
ttcagagagagaaag----ttacgatccataactgtttttcaagttcacttatcgttcatcattctcgttgatcttcatcaattttcattacgttttggt |
396 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40313354 |
ttcagagagagagagagagttacgatccataactgtttttcaagttcacttatcgttcatcattctcgttgatcttcatcaattttcattacgttttgct |
40313255 |
T |
|
| Q |
397 |
tctttgatcttgattcttgtcaagattctctcctttttcatcaattatgatagattttgtggttgaattgcttcaatttctctgttttttgtgattgatt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40313254 |
tctttgatcttgattcttgtcaagattctctcatttttcatcaattatcatagattttgtggttgaattgcttcaatttctctgttctttgtgattgatt |
40313155 |
T |
|
| Q |
497 |
tctcttccatatcttgcttcaacattcatcatcatcatcattcctccgtgccaaataccacttcatgttcataatcaagaaattgataccaattccattt |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40313154 |
tctcttccatatcttgcttcaacattcatcatcatcatcattcctccgtgccaaataccgcttcatgttcataatcaagaaattgataccaattccattt |
40313055 |
T |
|
| Q |
597 |
tctacgtttattcaaac |
613 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
40313054 |
tctacatttattcaaac |
40313038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 736414 - 736349
Alignment:
| Q |
149 |
gaggagaatgcacctacttagcttagtttatagagataacttgtgtaacaagttatcaagttagtt |
214 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||| |||||||| |
|
|
| T |
736414 |
gaggagaatgcaactacttagcttagtttacggagataacttgtataataagttatcgagttagtt |
736349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 38644592 - 38644555
Alignment:
| Q |
177 |
tatagagataacttgtgtaacaagttatcaagttagtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
38644592 |
tatagagataacttgtgtaacaagttatccaattagtt |
38644555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University