View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_69 (Length: 271)
Name: NF9133_low_69
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 23379773 - 23380021
Alignment:
| Q |
1 |
caggctgcttgttttcagaattagatgctagtccatggcttcatgctaagaatttcctttgtgtttggtgttgtctctccttagcttccttccaatggtg |
100 |
Q |
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| T |
23379773 |
caggctgcttgttttcagaattagatgctagtccatggcttgatgctaagaatgtcctttgtgtttggtgttgtctctccttagcttccttccaatggtg |
23379872 |
T |
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| Q |
101 |
ttttgttttgttgttctttatttagattttcttttaaagttgtgctactgtaatgtatacaatgtacaagtacaaccgcnnnnnnnttaaaagaatgaga |
200 |
Q |
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| T |
23379873 |
ttttgttttgttgttctttatttagattttcttttaaagttgtgctactgtaatgtatacaatgtacaagtacaaccgc-aaaaaattaaaagaatgaga |
23379971 |
T |
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| Q |
201 |
agtattacattatatactaccagtatcagtgaattatgatatttccatct |
250 |
Q |
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| T |
23379972 |
agtattacattatatactaccagtatcagtgaattatgatatttccatct |
23380021 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 21964469 - 21964544
Alignment:
| Q |
14 |
ttcagaattagatgctagtccatggcttcatgctaagaatttc-ctttgtgtttggtgttgtctctccttagcttcc |
89 |
Q |
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| T |
21964469 |
ttcagagttagatgctagtccatggcttgattctaagactttcactttgtg-ttggtgttgtatctccttagcttcc |
21964544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 8814642 - 8814575
Alignment:
| Q |
21 |
ttagatgctagtccatggcttcatgctaagaatttc-ctttgtgtttggtgttgtctctccttagcttc |
88 |
Q |
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| T |
8814642 |
ttagatgctagtccaaggcttgattctaagactttcactttgtg-ttggtgttgtatcttcttagcttc |
8814575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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