View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_75 (Length: 269)
Name: NF9133_low_75
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 45969330 - 45969078
Alignment:
| Q |
1 |
ccgtccttttgtcatcaaattccatagttttaactttgaaacttgcaggcatcaagccttgtcctgggctatagcagtccactgtcttctcccaactcta |
100 |
Q |
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| T |
45969330 |
ccgtctttttgtcatcaaattccatagttttaactttgaaacttgcaggcatcaagccttgtcctgggctatagcagtccactgtcttctcccaactcta |
45969231 |
T |
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| Q |
101 |
ttaaaatagaaaagagaagaaaagttatatcatatatccttgtatcatgttacaatatattaacgaataaaccatacataagtaacatatgtttgtacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45969230 |
ttaaaatagaaaagagaagaaaagttatatcatatatccttgtatcatgttacaatatattaacgaataaaccatacataagtaacatatgtttgtacat |
45969131 |
T |
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| Q |
201 |
agtttaatatgagcaaggacaatatatttttgacatatccatgaccattattt |
253 |
Q |
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| T |
45969130 |
agtttaatatgagcaaggacaatatatttttgacatatccatgaccattattt |
45969078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 37654185 - 37654253
Alignment:
| Q |
31 |
taactttgaaacttgcaggcatcaagccttgtcctgggctatagcagtccactgtcttctcccaactct |
99 |
Q |
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| T |
37654185 |
taactttgaaactagcaggcatcaaaccctgtcctggactgtagcagtccacagttttctcccaactct |
37654253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 50761944 - 50762010
Alignment:
| Q |
33 |
actttgaaacttgcaggcatcaagccttgtcctgggctatagcagtccactgtcttctcccaactct |
99 |
Q |
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|||||||| || || |||||||| ||||| |||||||| ||||| || || |||||||||||||||| |
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| T |
50761944 |
actttgaagctcgctggcatcaacccttgccctgggctgtagcaatcaacggtcttctcccaactct |
50762010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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