View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_79 (Length: 259)
Name: NF9133_low_79
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 47908700 - 47908927
Alignment:
| Q |
20 |
tgtgtatgataaaagagtcgcgaattgggaaattcagagtttgaaatatagttctagaaaacaatgagcatttaaaggtattagcatgattatgaactgc |
119 |
Q |
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| T |
47908700 |
tgtgtatgataaaagagtcgcgaattgggaaattcagagtttgaaatatagttctagaaaacaatgaacatttaaaggtattagcatgattatgaactgc |
47908799 |
T |
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| Q |
120 |
attaagcacatataattttgcctaacattacttgcctgtatctcagcaattaccatactgaaagcataagcaaaagctatgtttccaattgcttggaagg |
219 |
Q |
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| T |
47908800 |
attaagcacatataattttgcctaacattacttgcctgtatctcagcaattaccatactgaaagcataagcaaaagctatgtttccaattgcttggaagg |
47908899 |
T |
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| Q |
220 |
tattccacaacttctgcatgcctgtctc |
247 |
Q |
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| T |
47908900 |
tattccacaacttctgcatgcctgtctc |
47908927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 47902242 - 47902340
Alignment:
| Q |
136 |
tttgcctaacattacttgcctgtatctcagcaattaccatactgaaagcataagcaaaagctatgtttccaattgcttggaaggtattccacaacttct |
234 |
Q |
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| T |
47902242 |
tttgcttaaaattacttacttgtatctcaacaattacgttactaaaagcatatgcaaaagctatgtttccaattgcttgaaaggtattccacatcttct |
47902340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 47916923 - 47917027
Alignment:
| Q |
141 |
ctaacattacttgcctgtatctcagcaattaccatactgaaagcataagcaaaagctatgtttccaattgcttggaaggtattccacaacttctgcatgc |
240 |
Q |
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| T |
47916923 |
ctaagattacttgcctgtatttcaacaataaccatgctgaaacaatatgcaaatgctatgtttccaattgcctggaaggtattccacagcttctccgtgc |
47917022 |
T |
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| Q |
241 |
ctgtc |
245 |
Q |
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||||| |
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| T |
47917023 |
ctgtc |
47917027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 47923281 - 47923361
Alignment:
| Q |
148 |
tacttgcctgtatctcagcaattaccatactgaaagcataagcaaaagctatgtttccaattgcttggaaggtattccaca |
228 |
Q |
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| T |
47923281 |
tacttgcctgtatttcagcaattacagtgctaaaagaatatgcaaaagctatgtttcctattgcttgaaaggtattccaca |
47923361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 47897672 - 47897704
Alignment:
| Q |
196 |
ctatgtttccaattgcttggaaggtattccaca |
228 |
Q |
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| T |
47897672 |
ctatgtttccaattgcttggaaggtattccaca |
47897704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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