View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_8 (Length: 599)
Name: NF9133_low_8
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 4 - 597
Target Start/End: Original strand, 37135110 - 37135705
Alignment:
| Q |
4 |
catacaactcgtatcgtgcagacattctgaaacaccacttatctttaaactgcctacacaggttaagatccatgtctgttattaataaaccatcactgtt |
103 |
Q |
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| T |
37135110 |
catacaactcgtatcgcgcagtcattctgaaacaccacttgtctttaaactgcctacacaggttaagatccatgtctgttattaataaaccatcactgtt |
37135209 |
T |
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| Q |
104 |
acgtgataaagacggcgtgcaggatgcatctggtgctgaaacatagcttgatccataaaaatatcccaaatctgtatgtgctggcttgccatcaccagaa |
203 |
Q |
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| T |
37135210 |
acgtgataaagacggcgtgcaggatgcatctggtgctgaaacatagcttgatccataaaaatatcccaaatctgtatgtgctggcttgccatcaccagaa |
37135309 |
T |
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| Q |
204 |
gtaaatggattggggaatatctcagtcccaacgcggttgattgcagcaacaaagtaactatttgttattgcagcataacgtgcctgagaaacataacacc |
303 |
Q |
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| T |
37135310 |
gtaaatggattggggaatatctcagtcccaacgcggttgattgcagcaacaaagtaactatttgttattgcagcataacgtgcctgagaaacataacacc |
37135409 |
T |
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| Q |
304 |
ttcatttattaattttggtaaacaaaaataacacctttaagccgtgtatgattatgaatatatgcagatgttctgcaggtgtaaaatctggttgtatttg |
403 |
Q |
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| T |
37135410 |
ttcatttattaattttggtaaacaaaaataacacctttaagccgtgtatgattatgaatatatgcagatgttctgcaggtgtaaaatctggttgtatttg |
37135509 |
T |
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| Q |
404 |
catataaaattagtcacagctgtccagattaaacaggaagattaaagcacgccaattttcttatctagtcatttatgaacaaatttccaggtgaatatca |
503 |
Q |
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| T |
37135510 |
catataaaattagtcacagctgtccagattaaacaggaagattaaagcacgccaattttcttatctagtcatttatgaacaaatttcctggtgaatatca |
37135609 |
T |
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| Q |
504 |
gtctacatgtattagcatcgaataatgttataaacattaagaa--accagataagagtttaacatgtcttccatcaatataaaacaactgacctct |
597 |
Q |
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| T |
37135610 |
gcctacatgtattagcatcgaataatgttataaacattaagaaataccagataagagtttaacatgtcttccatcaatataaaacaactgacctct |
37135705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 37139130 - 37139433
Alignment:
| Q |
2 |
cacatacaactcgtatcgtgcagacattctgaaacaccacttatctttaaactgcctacacaggttaagatccatgtctgttattaataaaccatcactg |
101 |
Q |
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||||||||||||||||||||||| ||||| ||| | ||| || |||||| | ||||| |||| |||||||||||||||||||| |||||| ||||| ||| |
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| T |
37139130 |
cacatacaactcgtatcgtgcagtcattcggaagccccatttgtctttatattgcctgcacaagttaagatccatgtctgttactaataagccatccctg |
37139229 |
T |
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| Q |
102 |
ttacgtgataaagacggcgtgcaggatgcatctggtgctgaaacatagcttgatccataaaaatatcccaaatctgtatgtgctggcttgccatcaccag |
201 |
Q |
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| T |
37139230 |
ttgcgtgataaagatggtgtgcaggatgcatctggtgctgaaatataacttgatccataaaaatgaccaaaatctgcgtgtgctggtttgccatcaccag |
37139329 |
T |
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| Q |
202 |
aagtaaatggattggggaatatctcagtcccaacgcggttgattgcagcaacaaagtaactatttgttattgcagcataacgtgcctgagaaac-ataac |
300 |
Q |
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| T |
37139330 |
atgtaaatggattggggaatgtctcagtcccaacccggttgattgaagcaacaaagtaactatttgctattgcagcatttcgtgcctgaaaaacaataac |
37139429 |
T |
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| Q |
301 |
acct |
304 |
Q |
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|||| |
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| T |
37139430 |
acct |
37139433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 589
Target Start/End: Original strand, 37139603 - 37139636
Alignment:
| Q |
556 |
gagtttaacatgtcttccatcaatataaaacaac |
589 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
37139603 |
gagtctaacatgtcttccatcaatataaaacaac |
37139636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 597
Target Start/End: Original strand, 12077080 - 12077148
Alignment:
| Q |
531 |
ttataaacattaagaaa--ccagataagagtttaacatgtcttccatcaatataaaacaactgacctct |
597 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12077080 |
ttataaacattaagaaataccatataagagtttaacatgtcttccatcaatataaaacaactgacctct |
12077148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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