View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_82 (Length: 253)
Name: NF9133_low_82
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 43361230 - 43361380
Alignment:
| Q |
87 |
tggctctttgcttcaaacggctaaaattttcgtcagttgttgataagtttttctgtcaagttagtaagttgatgatgaaatgaaatctcccttctccatt |
186 |
Q |
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| T |
43361230 |
tggctctttgcttcaaacagctaaaattttcgtcagttgttgataagtttttctgtcaagttagtaagttgatgatgaaatgaaatctcccttctccatt |
43361329 |
T |
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| Q |
187 |
gctctatttttatagccactaaattattactttgcttgttgccattattat |
237 |
Q |
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| T |
43361330 |
gctctatttttatagccgctaaattattactttgcttgttgccattattat |
43361380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 49413947 - 49413824
Alignment:
| Q |
99 |
tcaaacggctaaaattttcgtcagttgttgataagtttttctgtcaagttagtaagttgatgatgaaatgaaatctcccttctccattg---ctctattt |
195 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
49413947 |
tcaaacagctaaaattttcatcagttgttgataagtttttctattaagttactaagttgatgatgaaatgaaatctcccttctccattgcatctctgttt |
49413848 |
T |
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| Q |
196 |
ttatagccactaaattattacttt |
219 |
Q |
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| T |
49413847 |
ttatagctcctagattattacttt |
49413824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43361170 - 43361228
Alignment:
| Q |
1 |
cttttttagaattaagttaaattaaatagttcaccaattattcatttcagtccattttc |
59 |
Q |
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| T |
43361170 |
cttttttagaattaagttaaattaaatagttcaccaattattcatttcaggcctttttc |
43361228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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