View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_87 (Length: 249)
Name: NF9133_low_87
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28612401 - 28612162
Alignment:
| Q |
1 |
ctgcatatagtgttccagtccaaaattatctgggaaataccttttttgtgaaatcattcaatgatgacatatggaaggtgagaagatatgcaatcgaccg |
100 |
Q |
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| T |
28612401 |
ctgcatatagtgttccagtccaaaattatatgggaaataccttttttgtgaaatcattcaatgatgacatatggaaggtgagaaaatatgcaatcgaccg |
28612302 |
T |
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| Q |
101 |
ggatagacctgcttcatatacactcgacgtgtacaaattggaactggatgtccagagtggaaaacttgaacagatgaacaaactagagagtttggaagac |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28612301 |
ggataggcctgcttcatatacactcgacgtgtacaaattggaactggatgtccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagac |
28612202 |
T |
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| Q |
201 |
aacattttatttgtcggaattggtgattcaatttctgtgc |
240 |
Q |
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| T |
28612201 |
aacattttatttgtcggaattggtgattcaatttctgtgc |
28612162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 29288415 - 29288524
Alignment:
| Q |
134 |
caaattggaactggatgtccagagtggaaaacttgaacagatgaacaaactagagagtttggaagacaacattttatttgtcggaa---ttggtgattca |
230 |
Q |
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| T |
29288415 |
caaattggaactggatgcccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcggaagtgttggtgattcc |
29288514 |
T |
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| Q |
231 |
atttctgtgc |
240 |
Q |
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|||||||||| |
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| T |
29288515 |
atttctgtgc |
29288524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 29282976 - 29283085
Alignment:
| Q |
134 |
caaattggaactggatgtccagagtggaaaacttgaacagatgaacaaactagagagtttggaagacaacattttatttgtcggaa---ttggtgattca |
230 |
Q |
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| T |
29282976 |
caaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaagtgttggtgattca |
29283075 |
T |
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| Q |
231 |
atttctgtgc |
240 |
Q |
| |
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|| ||||||| |
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| T |
29283076 |
atatctgtgc |
29283085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 29270591 - 29270696
Alignment:
| Q |
134 |
caaattggaactggatgtccagagtggaaaacttgaacagatgaacaaactagagagtttggaagacaacattttatttgtcggaattggtgattcaatt |
233 |
Q |
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| T |
29270591 |
caaaatggaaatggacgcccagagcggaaaagttgaacaaataaaaaaacttgagagtttagagaacaacattttatttgtcggaatcggtgattcaatt |
29270690 |
T |
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| Q |
234 |
tctgtg |
239 |
Q |
| |
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|||||| |
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| T |
29270691 |
tctgtg |
29270696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 28623327 - 28623405
Alignment:
| Q |
158 |
tggaaaacttgaacagatgaacaaactagagagtttggaagacaacattttatttgtcggaattggtgattcaatttct |
236 |
Q |
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| T |
28623327 |
tggaaaacttgaacaaatgaacaaacttaagagtttggaagacaacattttttttgttggaatcgggaattcaatttct |
28623405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 29275452 - 29275558
Alignment:
| Q |
134 |
caaattggaactggatgtccagagtggaaaacttgaacagatgaacaaactagagagtttggaagacaacattttatttgtcggaattggtgattcaatt |
233 |
Q |
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||||||||||||||| | |||||| | |||| ||||||| || |||||||| |||||||||||| ||||||||||||||| |||| ||| ||| |||| |
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| T |
29275452 |
caaattggaactggacgcccagagcgaaaaagttgaacaaatcaacaaacttgagagtttggaaagcaacattttatttgttggaactggcaatttaatt |
29275551 |
T |
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| Q |
234 |
tctgtgc |
240 |
Q |
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||||||| |
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| T |
29275552 |
tctgtgc |
29275558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 28615426 - 28615516
Alignment:
| Q |
122 |
actcgacgtgtacaaattggaactggatgtccagagtggaaaacttgaacagatgaacaaactagagagtttggaagacaacattttattt |
212 |
Q |
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| T |
28615426 |
actcgacgtttacaaattgaaactggacaccaagagtggaaaacttgtacaaatgaacatgcttaagagtttgggagacaacattttattt |
28615516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 49145819 - 49145871
Alignment:
| Q |
187 |
agagtttggaagacaacattttatttgtcggaattggtgattcaatttctgtg |
239 |
Q |
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||||||||| ||| |||||||||||||| ||| ||||||||||||||||||| |
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| T |
49145819 |
agagtttgggagataacattttatttgtaggagctggtgattcaatttctgtg |
49145871 |
T |
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