View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9133_low_88 (Length: 249)
Name: NF9133_low_88
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_88 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34765500 - 34765271
Alignment:
| Q |
1 |
taatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34765500 |
taatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctca |
34765401 |
T |
|
| Q |
101 |
agagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccacaatgagttcattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34765400 |
agagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccacaatgagttcattgt |
34765301 |
T |
|
| Q |
201 |
cacattcctcgttccaacgcttgatcctct |
230 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
34765300 |
cacattcctcgttccaacacttgatcctct |
34765271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 44015408 - 44015301
Alignment:
| Q |
45 |
cagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttga |
144 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||||||| || |||| |||| |||| ||||||||| |||||| | ||||| |||||| |||||| |
|
|
| T |
44015408 |
cagaagctaactcttttggatttgagttataatagcttatctggtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttga |
44015309 |
T |
|
| Q |
145 |
gctcaaat |
152 |
Q |
| |
|
|||||||| |
|
|
| T |
44015308 |
gctcaaat |
44015301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 6440469 - 6440526
Alignment:
| Q |
161 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaac |
218 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaac |
6440526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University