View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_92 (Length: 240)
Name: NF9133_low_92
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_92 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8762954 - 8762734
Alignment:
| Q |
1 |
tatttcaataatattataatatcatcattagcagactgaattataatgttgataatttttctgtctctaatttttgtcattatcttaactttctctagta |
100 |
Q |
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| T |
8762954 |
tatttcaataatattataataacatcattagcagactgaatgataatgttgataatttttctgtctctaatttttgtcattatcttaactttctcgagta |
8762855 |
T |
|
| Q |
101 |
tatcttgcaaactctaatgctttggtatatataatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttgaaggc |
200 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8762854 |
tatcttgcaaactctaatgctttggt--atatgatcacaatacttgcagaagtatcgcatatttctgcgagatgttgccgagaaaggaatggttgaaggc |
8762757 |
T |
|
| Q |
201 |
atgtctcagagagctctagaatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
8762756 |
atgtctcagagagctctagaatc |
8762734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 8789433 - 8789222
Alignment:
| Q |
1 |
tatttcaataatattataatatcatcattagcagactgaattataatgttgataatttttctgtctctaatttttgtcattatcttaactttctctagta |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
8789433 |
tatttcaataatattataatatcat---tagcagactgaatgataatgttgataatttttctgtctctaatttttgtcgttgtcttaactttctctagta |
8789337 |
T |
|
| Q |
101 |
tatcttgcaaactctaatgctttggtatatataatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttgaaggc |
200 |
Q |
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||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8789336 |
tatcttgcaaactctaatgctttag--tatatgatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttggaggc |
8789239 |
T |
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| Q |
201 |
atgtctcagagagctcta |
218 |
Q |
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| ||||| ||||||||| |
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| T |
8789238 |
-tatctcacagagctcta |
8789222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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