View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_98 (Length: 233)
Name: NF9133_low_98
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 26721377 - 26721178
Alignment:
| Q |
17 |
acaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721377 |
acaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaa |
26721278 |
T |
|
| Q |
117 |
atcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagcaaaaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
26721277 |
atcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaataaaaattaaagacctaactaaatactttttgaacagcaaaaac |
26721178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 2986496 - 2986295
Alignment:
| Q |
17 |
acaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2986496 |
acaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaa |
2986397 |
T |
|
| Q |
117 |
a--tcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagcaaaa |
214 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
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| T |
2986396 |
aactcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacagcaaaa |
2986297 |
T |
|
| Q |
215 |
ac |
216 |
Q |
| |
|
|| |
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|
| T |
2986296 |
ac |
2986295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 45117568 - 45117769
Alignment:
| Q |
17 |
acaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45117568 |
acaaaataaacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaa |
45117667 |
T |
|
| Q |
117 |
a--tcaatcagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagcaaaa |
214 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
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| T |
45117668 |
aactcaatcagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacagcaaaa |
45117767 |
T |
|
| Q |
215 |
ac |
216 |
Q |
| |
|
|| |
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|
| T |
45117768 |
ac |
45117769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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