View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9134_low_1 (Length: 977)
Name: NF9134_low_1
Description: NF9134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9134_low_1 |
 | |
|
| [»] scaffold0703 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 743; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 9 - 959
Target Start/End: Original strand, 31800617 - 31801580
Alignment:
| Q |
9 |
tttggtgttaggattagattttggattcttatttttccattggattctgaaatgtttatgtgtatccttaatatgtttttgtctccataaataccttgtg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31800617 |
tttggtgttaggattagattttggattcttatttttccattggattctgaaatgtttatgtgtatcgttaatatgtttttgtctccataaataccttgtg |
31800716 |
T |
|
| Q |
109 |
t--------------caatccaacttatggtcaatttgattgtactattcttattttagttattgaatggagcttattttttaaaataaaatttggtatt |
194 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
31800717 |
ttgatctcaaaatgtcaatccaacttatggtcaatttgattgtactattcttattttagtatttgaatggagcttattttttaaaagaaaatttgttatt |
31800816 |
T |
|
| Q |
195 |
gttaataaaatttgttaaaggctatcttttcttatttaaaggatcagatatggnnnnnnntgccagtcttggagtgcccgatcactatctcgagccggta |
294 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
31800817 |
gttaatagaatttgtttaaggctatcttttcttatttaaaggatcagatatggaaaaaa-tgccaatcttggagtgcccgatcactatctcgtgccggta |
31800915 |
T |
|
| Q |
295 |
aggaagttttgataaaatatgttgcacaagtcatcccttcttactgtatgggagcctttctcatccctgcatcactttgtgaagaacttgagcggatgat |
394 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
31800916 |
aggaagttttgataaaatttgttgcacaagtcatcccttcttactgtatgggagcctttctcatccccgcatcgctttgtgaagaacttgagcggatgat |
31801015 |
T |
|
| Q |
395 |
gaattcattttactggggttcgnnnnnnntggttgacgaggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgcct |
494 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
31801016 |
gaattcattttactggggttcgaaaaaaatggtcgacgaggcatcaattggatgcattgggattacctcacacttcacaaaagtctaggtggccttggct |
31801115 |
T |
|
| Q |
495 |
tttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaa |
594 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31801116 |
ttcgaaatttggaagctttcaatctatctatgctcggcaagcaaggttggaaactcttatccgactcctcctctttattcaccagaatcctcaaagctaa |
31801215 |
T |
|
| Q |
595 |
atacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggc |
694 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31801216 |
atacttccctagactggacttcttggatgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctttacttactttgggc |
31801315 |
T |
|
| Q |
695 |
catagatggaagattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaaccttccctctctcaaaccatccacttcaccgccgctac |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
31801316 |
catagatggaagattggagatggttctaagattaatgtgtggagtatgccgtggatccgcaaccttctctctctcaaaccatccacttcaccgccactac |
31801415 |
T |
|
| Q |
795 |
accaagaagaccttacggtaaattctttgttgagtgccgacttgaactcttgggacactactttggtgcaatctctttttaatgacgcagaagctgcttc |
894 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
31801416 |
accaagaagacctcacggtaaattctttgttgagtgctgacttgaactcttgggacactactttggtgcaatctctttttaatgatgcagaagctgctgc |
31801515 |
T |
|
| Q |
895 |
cattttgtcaacttctctctttgctcgttccagttctgatattcgaatttggaaagccacggtag |
959 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31801516 |
cattttgtcaactcctctctttgctcgttccagttctgatattcgaatttggaaagtcacggtag |
31801580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 215 - 959
Target Start/End: Original strand, 46598153 - 46598897
Alignment:
| Q |
215 |
gctatcttttcttatttaaaggatcagatatggnnnnnnntgccagtcttggagtgcccgatcactatctcgagccggtaaggaagttttgataaaatat |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
46598153 |
gctatcttttcttatttaaaggatcggatatggaaaaaa-tgccagtcttggagtgtccgatcactatctcgtgccgataaggaagttttgataaaatcc |
46598251 |
T |
|
| Q |
315 |
gttgcacaagtcatcccttcttactgtatgggagcctttctcatccctgcatcactttgtgaagaacttgagcggatgatgaattcattttactggggtt |
414 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46598252 |
gttgcacaagccatcccttcttactgtatgggagcctttctcatccctgcatcgctttgtgaagaacttgagcggatgatgaattcattttactggggtt |
46598351 |
T |
|
| Q |
415 |
cgnnnnnnn-tggttgacgaggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagcttt |
513 |
Q |
| |
|
|| |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
46598352 |
cgaaaaaaaatggtcgacgaggcatcaattggatgcgttgggatttcctcacacttcacaaaagtctaggtggccttggctttcgaaatttggaagcttt |
46598451 |
T |
|
| Q |
514 |
caatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggac |
613 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
46598452 |
caatctatctatgctcggcaagcaaggttggaaactcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagacgggac |
46598551 |
T |
|
| Q |
614 |
ttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggag |
713 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46598552 |
ttcttggatgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggag |
46598651 |
T |
|
| Q |
714 |
atggttctaagattaatgtgtggagtatgacgtggatccgcaaccttccctctctcaaaccatccacttcaccgccgctacaccaagaagaccttacggt |
813 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
46598652 |
atggttctaagattaatgtgtggagtatgccgtggatccgcaaccttctctctctcaaaccatccacttcaccgccgctacaccaacacgaccttacggt |
46598751 |
T |
|
| Q |
814 |
aaattctttgttgagtgccgacttgaactcttgggacactactttggtgcaatctctttttaatgacgcagaagctgcttccattttgtcaacttctctc |
913 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
46598752 |
aaattctttgttgagtgccgatttcaactcttgggacactactttggtgcaatctctttttaatgacgcagaagctgctgccattttgtcaactcctctc |
46598851 |
T |
|
| Q |
914 |
tttgctcgttccagttctgatattcgaatttggaaagccacggtag |
959 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
46598852 |
tttgctcgttccggttctgatgttcgaatttggaaagccacggtag |
46598897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 351 - 959
Target Start/End: Original strand, 512339 - 512950
Alignment:
| Q |
351 |
tttctcatccctgcatcactttgtgaagaacttgagcggatgatgaattcattttactggggttcgnnnnnnn---tggttgacgaggcatcaattggat |
447 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||| |||||||||||||| |
|
|
| T |
512339 |
tttctcatccccgcatcgctttgtgaagaacttgaacggatgatgaattcattttattggggttcgaaaaaaaaaatggtcgacggggcatcaattggat |
512438 |
T |
|
| Q |
448 |
gcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaa |
547 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
512439 |
gatttgggattacctcacacttcacaaaagtctaggtggccttggctttcgaaatttggaagctttcaatctatctatgctcagcaagtaaggttggaaa |
512538 |
T |
|
| Q |
548 |
ctcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagtt |
647 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
512539 |
ctcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagacgggacttcttggatgcaaccctcggtcataatccaagct |
512638 |
T |
|
| Q |
648 |
gtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtggagtatgacgtg |
747 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
512639 |
atacctgaaggagcttatggagtactcaatctttacttactttgggccatagatggaagaatgtagatggttctaagattaatgtgtggagtattccgtg |
512738 |
T |
|
| Q |
748 |
gatccgcaaccttccctctctcaaaccatccacttcaccgccgctacaccaagaagaccttacggtaaattctttgttgagtgccgacttgaactcttgg |
847 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
512739 |
gatccgcaaccttccctctctcaaaccatccacttcaccgccgctacaccaagaagaccttacggtaaattctttgttgagtgccgatttcaactcttgg |
512838 |
T |
|
| Q |
848 |
gacactactttggtgcaatctctttttaatgacgcagaagctgcttccattttgtcaacttctctctttgctcgttccagttctgatattcgaatttgga |
947 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
512839 |
gacactactttggtgcaatctctttttaatgacgcagaagttgttgccattttgtcaactcctctctttgctcgttccagttctgatattcgaatttgga |
512938 |
T |
|
| Q |
948 |
aagccacggtag |
959 |
Q |
| |
|
|||||||||||| |
|
|
| T |
512939 |
aagccacggtag |
512950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 506 - 756
Target Start/End: Complemental strand, 12352172 - 12351922
Alignment:
| Q |
506 |
gaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttcccta |
605 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||| ||||| |||| | |||||||||||||||||||| || || |
|
|
| T |
12352172 |
gaagcatttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttcccc |
12352073 |
T |
|
| Q |
606 |
tactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaa |
705 |
Q |
| |
|
| ||| || |||||||| | || |||||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
12352072 |
gaagggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccatagctggaa |
12351973 |
T |
|
| Q |
706 |
gattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaa |
756 |
Q |
| |
|
|||||||| || ||| | |||||||||||||||||| | ||||||||||| |
|
|
| T |
12351972 |
aattggagacggctctcaaattaatgtgtggagtatgccttggatccgcaa |
12351922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 506 - 777
Target Start/End: Original strand, 41146399 - 41146670
Alignment:
| Q |
506 |
gaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttcccta |
605 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||| ||||| |||| | |||||||||||||||||||| || || |
|
|
| T |
41146399 |
gaagcatttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttcccc |
41146498 |
T |
|
| Q |
606 |
tactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaa |
705 |
Q |
| |
|
| ||| || |||||||| | || |||||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
41146499 |
gaagggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaa |
41146598 |
T |
|
| Q |
706 |
gattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaaccttccctctctcaaaccatc |
777 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| | ||||||||||| | || ||||||||||||| |
|
|
| T |
41146599 |
aattggagacggttccctaattaatgtgtggagtatgccttggatccgcaatttgccaactctcaaaccatc |
41146670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 614 - 750
Target Start/End: Complemental strand, 18222816 - 18222680
Alignment:
| Q |
614 |
ttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggag |
713 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||| | |||||||||||| | ||||||| |||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
18222816 |
ttcttggatgcctctctcggccataatccaagctatacttggaggagtctttggagtattcaatcattacttaccttggggcatagatggaagattggag |
18222717 |
T |
|
| Q |
714 |
atggttctaagattaatgtgtggagtatgacgtggat |
750 |
Q |
| |
|
| ||| |||| || ||||| || | |||| ||||||| |
|
|
| T |
18222716 |
acggtactaaaataaatgtctgtaatatgtcgtggat |
18222680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 617 - 762
Target Start/End: Original strand, 29843367 - 29843512
Alignment:
| Q |
617 |
ttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatg |
716 |
Q |
| |
|
|||||||| | ||| |||||| ||||||||| ||| |||| | |||||||||| || |||||||||| |||||||||||||||| |||| | |||| |
|
|
| T |
29843367 |
ttggatgccaacctaggtcataatccaagttatacaaggagcaatatatggagtacaaaacctttacttaccttgggccatagatggacgattagtgatg |
29843466 |
T |
|
| Q |
717 |
gttctaagattaatgtgtggagtatgacgtggatccgcaaccttcc |
762 |
Q |
| |
|
|||| | |||||||||||||||||| | ||||| | ||||||||| |
|
|
| T |
29843467 |
attctcaaattaatgtgtggagtatgccttggattcacaaccttcc |
29843512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 12352346 - 12352267
Alignment:
| Q |
333 |
tcttactgtatgggagcctttctcatccctgcatcactttgtgaagaacttgagcggatgatgaattcattttactgggg |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |||||||| || |||| ||||||||| |||||||| ||||| |
|
|
| T |
12352346 |
tcttactgtatgggagcctttcttatccctacatctctttgtgatgagattgaaaagatgatgaactcattttattgggg |
12352267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 41146225 - 41146304
Alignment:
| Q |
333 |
tcttactgtatgggagcctttctcatccctgcatcactttgtgaagaacttgagcggatgatgaattcattttactgggg |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |||||||| || |||| ||||||||| |||||||| ||||| |
|
|
| T |
41146225 |
tcttactgtatgggagcctttcttatccctacatctctttgtgatgagattgaaaagatgatgaactcattttattgggg |
41146304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 711
Target Start/End: Original strand, 43968801 - 43968898
Alignment:
| Q |
614 |
ttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattgg |
711 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| | |||||| ||||| | |||||||||||| ||| ||||||||||| ||| |||||| ||||| |
|
|
| T |
43968801 |
ttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtactcaacatttgcttactttgggttatatatggaaaattgg |
43968898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 506 - 777
Target Start/End: Original strand, 23149914 - 23150185
Alignment:
| Q |
506 |
gaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttcccta |
605 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||| ||||| |||| | |||||||||||||||||||| || || |
|
|
| T |
23149914 |
gaagcatttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttcccc |
23150013 |
T |
|
| Q |
606 |
tactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaa |
705 |
Q |
| |
|
| ||| || |||||||| | || |||||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23150014 |
gaagggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaa |
23150113 |
T |
|
| Q |
706 |
gattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaaccttccctctctcaaaccatc |
777 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||||| | ||||||||||| | || ||||||||||||| |
|
|
| T |
23150114 |
aattggagacggttctcaaattaatgtgtggagtatgccttggatccgcaatttgccaactctcaaaccatc |
23150185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 434 - 720
Target Start/End: Complemental strand, 42578271 - 42577985
Alignment:
| Q |
434 |
ggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggca |
533 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| ||||| ||||||| ||||| || | |||| | | |||||||||||||||| || |||| ||| | |
|
|
| T |
42578271 |
ggcatcaattggatgaaatgggacaagctcactcttcataaaagtcgtggtggtctaggctttcgtgacatggaagctttcaatctctcaatgcacggta |
42578172 |
T |
|
| Q |
534 |
agcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcgg |
633 |
Q |
| |
|
||||| ||||||||||| | || |||| ||| ||| | || | ||||| |||||||||||||||||| | ||| ||||||||||| | || || |
|
|
| T |
42578171 |
agcaaagttggaaactcctcaccgactcaaactccttacttactcgtgtcctcgaagctaaatacttccctagaagggatttcttggatgcccctcttgg |
42578072 |
T |
|
| Q |
634 |
tcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttc |
720 |
Q |
| |
|
||| ||||||| | || |||||||| | ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
42578071 |
ccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcatagatggaagattggagatggttc |
42577985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 504 - 771
Target Start/End: Complemental strand, 13022358 - 13022091
Alignment:
| Q |
504 |
tggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccc |
603 |
Q |
| |
|
||||||| || ||||| |||||||| || |||||| ||||||||||||| || |||| |||| ||| | || | ||||||||| ||||||||||| |
|
|
| T |
13022358 |
tggaagcatttaatctctctatgcttggtaagcaaagttggaaactcttgaccgactctacctccttacttactcgtgtcctcaaagacaaatacttccc |
13022259 |
T |
|
| Q |
604 |
tatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatgg |
703 |
Q |
| |
|
| ||| ||||||||||| ||||||||||| ||||||| | ||||||||||| | |||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
13022258 |
acgaagggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacattttcttactttgggttatagatgg |
13022159 |
T |
|
| Q |
704 |
aagattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaaccttccctctctcaa |
771 |
Q |
| |
|
|| ||||| || ||| | || |||||||| |||| |||| | |||||||| ||||| ||||| ||||| |
|
|
| T |
13022158 |
aaaattggtgacggtacgaaaattaatgtttggaatatgccttggatccgtaacctcccctccctcaa |
13022091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 504 - 771
Target Start/End: Complemental strand, 13093882 - 13093615
Alignment:
| Q |
504 |
tggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccc |
603 |
Q |
| |
|
||||||| || ||||| |||||||| || |||||| ||||||||||||| || |||| |||| ||| | || | ||||||||| |||||||| || |
|
|
| T |
13093882 |
tggaagcatttaatctctctatgcttggtaagcaaagttggaaactcttgaccgactctacctccttacttactcgtgtcctcaaagacaaatactttcc |
13093783 |
T |
|
| Q |
604 |
tatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatgg |
703 |
Q |
| |
|
| ||| ||||||||||| ||||||||||| ||||||| | ||||||||||| | |||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
13093782 |
acgaagggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacatttgcttactttgggttatagatgg |
13093683 |
T |
|
| Q |
704 |
aagattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaaccttccctctctcaa |
771 |
Q |
| |
|
|| ||||| || ||| | || ||||||||||||| |||| | |||||||| ||||| ||||| ||||| |
|
|
| T |
13093682 |
aaaattggtgacggtacgaaaattaatgtgtggaatatgccttggatccgtaacctcccctccctcaa |
13093615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 614 - 738
Target Start/End: Original strand, 7273774 - 7273898
Alignment:
| Q |
614 |
ttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggag |
713 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||| | || ||||| ||| | |||||||| ||| ||||||||| ||||| ||| ||||||||||| ||| |
|
|
| T |
7273774 |
ttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaacatttacttaccttgggtcatggatggaagattagag |
7273873 |
T |
|
| Q |
714 |
atggttctaagattaatgtgtggag |
738 |
Q |
| |
|
||||||| || ||||| |||||||| |
|
|
| T |
7273874 |
atggttccaaaattaaagtgtggag |
7273898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 23149740 - 23149783
Alignment:
| Q |
333 |
tcttactgtatgggagcctttctcatccctgcatcactttgtga |
376 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
23149740 |
tcttactgtatgggagcctttcttatccctacatctctttgtga |
23149783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 664 - 717
Target Start/End: Complemental strand, 33496365 - 33496311
Alignment:
| Q |
664 |
atggagtactcaa-tctttacttactttgggccatagatggaagattggagatgg |
717 |
Q |
| |
|
||||||||||||| | ||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
33496365 |
atggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg |
33496311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 9e-42; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 506 - 777
Target Start/End: Original strand, 32498191 - 32498462
Alignment:
| Q |
506 |
gaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttcccta |
605 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||| ||||| |||| | |||||||||||||||||||| || || |
|
|
| T |
32498191 |
gaagcatttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttcccc |
32498290 |
T |
|
| Q |
606 |
tactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaa |
705 |
Q |
| |
|
| ||| || |||||||| | || |||||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32498291 |
gaagggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaa |
32498390 |
T |
|
| Q |
706 |
gattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaaccttccctctctcaaaccatc |
777 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| | ||||||||||| | || ||||||||||||| |
|
|
| T |
32498391 |
aattggagacggttccctaattaatgtgtggagtatgccttggatccgcaatttgccaactctcaaaccatc |
32498462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 294 - 603
Target Start/End: Complemental strand, 23601728 - 23601418
Alignment:
| Q |
294 |
aaggaagttttgataaaatatgttgcacaagtcatcccttcttactgtatgggagcctttctcatccctgcatcactttgtgaagaacttgagcggatga |
393 |
Q |
| |
|
|||||| | |||||||||||||| || |||| ||||||||||| |||||||| ||||||||||| ||| | || | || || || | |||| |||| |
|
|
| T |
23601728 |
aaggaaatcttgataaaatatgtcgctcaagctatcccttcttattgtatgggtgcctttctcattcctacttctttatgcgatgagatcgagccaatga |
23601629 |
T |
|
| Q |
394 |
tgaattcattttactggggttc-gnnnnnnntggttgacgaggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgc |
492 |
Q |
| |
|
||||||| ||||| ||| |||| | |||||| || || || ||||||||| ||||||| ||||||| | ||||||||| |||| ||||||| |
|
|
| T |
23601628 |
tgaattcgttttattggagttctgaaaagaatggttgtcgtggaattaattggatgtgttgggataagctcactttacacaaaagtttagggggccttgg |
23601529 |
T |
|
| Q |
493 |
cttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagct |
592 |
Q |
| |
|
|||| | |||||||| ||||||||||| |||||| | || ||| || ||||||| ||| || ||||| ||||| || ||||| | |||||||||||| |
|
|
| T |
23601528 |
ctttcgtaatttggaggctttcaatctatctatgattggaaagaaaatttggaaaatctaatttgactccacctctctactcacctggatcctcaaagct |
23601429 |
T |
|
| Q |
593 |
aaatacttccc |
603 |
Q |
| |
|
||||||||||| |
|
|
| T |
23601428 |
aaatacttccc |
23601418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 32498017 - 32498096
Alignment:
| Q |
333 |
tcttactgtatgggagcctttctcatccctgcatcactttgtgaagaacttgagcggatgatgaattcattttactgggg |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |||||||| || |||| ||||||||| |||||||| ||||| |
|
|
| T |
32498017 |
tcttactgtatgggagcctttcttatccctacatctctttgtgatgagattgaaaagatgatgaactcattttattgggg |
32498096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 742
Target Start/End: Complemental strand, 54422767 - 54422609
Alignment:
| Q |
584 |
ctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttac |
683 |
Q |
| |
|
|||||||| ||||||||||| | | ||| |||||||| ||| || ||||| ||||||| | ||||| ||||| |||||||| | |||||| | | |
|
|
| T |
54422767 |
ctcaaagccaaatacttcccgaggcgggatttcttggaagcacgtcttggtcacaatccaagctacacttgaaggagtctatggagtgcccaatctctgc |
54422668 |
T |
|
| Q |
684 |
ttactttgggccatagatggaagattggagatggttctaagattaatgtgtggagtatg |
742 |
Q |
| |
|
|||| ||||| |||||||||||||| || ||||| || || |||||| ||||||||||| |
|
|
| T |
54422667 |
ttaccttggggcatagatggaagatcggtgatggctcaaaaattaatatgtggagtatg |
54422609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 684 - 737
Target Start/End: Original strand, 43732739 - 43732792
Alignment:
| Q |
684 |
ttactttgggccatagatggaagattggagatggttctaagattaatgtgtgga |
737 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| | || ||||||||||||| |
|
|
| T |
43732739 |
ttactttgggtcatagatggaagattggtaatggtaccaaaattaatgtgtgga |
43732792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 473 - 550
Target Start/End: Complemental strand, 54422878 - 54422801
Alignment:
| Q |
473 |
aaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactc |
550 |
Q |
| |
|
|||||||| |||||||||| |||| | || ||||||| |||||||| || ||||| || || ||||||||||||||| |
|
|
| T |
54422878 |
aaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgcttggtaaacaaggttggaaactc |
54422801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 415
Target Start/End: Complemental strand, 54423086 - 54422929
Alignment:
| Q |
258 |
cagtcttggagtgcccgatcactatctcgagccggtaaggaagttttgataaaatatgttgcacaagtcatcccttcttactgtatgggagcctttctca |
357 |
Q |
| |
|
|||||||||||||| || || ||||| || || || || ||||| ||||| |||| || ||||||| || || ||||| |||||||| || || |||| |
|
|
| T |
54423086 |
cagtcttggagtgctcgctccctatcacgtgcaggaaaagaagtcttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctca |
54422987 |
T |
|
| Q |
358 |
tccctgcatcactttgtgaagaacttgagcggatgatgaattcattttactggggttc |
415 |
Q |
| |
|
| || | || | ||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
54422986 |
ttccgacttctttatgtgaagaaatggacaggatgatgaattcattttactggggttc |
54422929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 429 - 762
Target Start/End: Complemental strand, 9182243 - 9181910
Alignment:
| Q |
429 |
gacgaggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgct |
528 |
Q |
| |
|
|||||||||| |||||| ||| ||||| |||| |||| ||||||||| |||| ||||| | ||| | || | |||||||| || || |||||||| |
|
|
| T |
9182243 |
gacgaggcattaattggttgcgatgggaaaagcttacacgtcacaaaagcttagggggcctaggcttccggaacctagaagcttttaacctctctatgct |
9182144 |
T |
|
| Q |
529 |
cggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaacc |
628 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||| |||||||| | | || ||||||||||||||||||| ||| | ||| || |||||||| | | |
|
|
| T |
9182143 |
tggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaac |
9182044 |
T |
|
| Q |
629 |
ctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagatta |
728 |
Q |
| |
|
||||| ||| ||||||||| ||| |||||||| |||||||||| |||||||||||||| ||||| |||||||||||||| || ||||||||| | |||| |
|
|
| T |
9182043 |
ctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaatta |
9181944 |
T |
|
| Q |
729 |
atgtgtggagtatgacgtggatccgcaaccttcc |
762 |
Q |
| |
|
|| ||||| ||||| | ||||| |||| |||||| |
|
|
| T |
9181943 |
atttgtggcgtatgccttggattcgcacccttcc |
9181910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 429 - 762
Target Start/End: Original strand, 11626030 - 11626363
Alignment:
| Q |
429 |
gacgaggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgct |
528 |
Q |
| |
|
|||||||||| |||||| ||| ||||| |||| |||| ||||||||| |||| ||||| | ||| | || | |||||||| || || |||||||| |
|
|
| T |
11626030 |
gacgaggcattaattggttgcgatgggaaaagcttacacgtcacaaaagcttagggggcctaggcttccggaacctagaagcttttaacctctctatgct |
11626129 |
T |
|
| Q |
529 |
cggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaacc |
628 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||| |||||||| | | || ||||||||||||||||||| ||| | ||| || |||||||| | | |
|
|
| T |
11626130 |
tggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaac |
11626229 |
T |
|
| Q |
629 |
ctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagatta |
728 |
Q |
| |
|
||||| ||| ||||||||| ||| |||||||| |||||||||| |||||||||||||| ||||| |||||||||||||| || ||||||||| | |||| |
|
|
| T |
11626230 |
ctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaatta |
11626329 |
T |
|
| Q |
729 |
atgtgtggagtatgacgtggatccgcaaccttcc |
762 |
Q |
| |
|
|| ||||| ||||| | ||||| |||| |||||| |
|
|
| T |
11626330 |
atttgtggcgtatgccttggattcgcacccttcc |
11626363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 429 - 762
Target Start/End: Complemental strand, 10160467 - 10160134
Alignment:
| Q |
429 |
gacgaggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgct |
528 |
Q |
| |
|
|||||||||| |||||| ||| ||||| |||| |||| ||||||||| |||| ||||| | ||| | || | |||||||| || || |||||||| |
|
|
| T |
10160467 |
gacgaggcattaattggttgcgatgggaaaagcttacacgtcacaaaagcttagggggcctaggcttccggaacctagaagcttttaacctctctatgct |
10160368 |
T |
|
| Q |
529 |
cggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaacc |
628 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||| |||||||| | | || ||||||||||||||||||| ||| | ||| || |||||||| | | |
|
|
| T |
10160367 |
tggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaac |
10160268 |
T |
|
| Q |
629 |
ctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagatta |
728 |
Q |
| |
|
||||| ||| ||||||||| ||| |||||||| |||||||||| |||||||||||||| ||||| |||||||||||||| || ||||||||| | |||| |
|
|
| T |
10160267 |
ctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaatta |
10160168 |
T |
|
| Q |
729 |
atgtgtggagtatgacgtggatccgcaaccttcc |
762 |
Q |
| |
|
|| ||||| ||||| | ||||| |||| |||||| |
|
|
| T |
10160167 |
atttgtggcgtatgccttggattcgcacccttcc |
10160134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 584 - 720
Target Start/End: Complemental strand, 21731185 - 21731049
Alignment:
| Q |
584 |
ctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttac |
683 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||| | || |||||| ||||||| | | |||||||| | ||||||||||||||| | | |
|
|
| T |
21731185 |
ctcaaagctaaatacttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggaggagtctttggagtactcaatctcttc |
21731086 |
T |
|
| Q |
684 |
ttactttgggccatagatggaagattggagatggttc |
720 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| ||||| |
|
|
| T |
21731085 |
ttaccttgggccatagatggaaaattagagacggttc |
21731049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 470 - 736
Target Start/End: Original strand, 16861850 - 16862116
Alignment:
| Q |
470 |
cacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctt |
569 |
Q |
| |
|
||||||||||| |||||||| | ||| | ||||||||||| |||||||| |||||||| || |||||| ||||||||||| | | |||| || | |
|
|
| T |
16861850 |
cacaaaagtcttggtggcctcggttttcgcaatttggaagcattcaatctttctatgcttggtaagcaaagttggaaactcatgacagactcaaattcct |
16861949 |
T |
|
| Q |
570 |
tattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggag |
669 |
Q |
| |
|
|| | || | |||||||||| ||||| |||||| || ||| |||||||| ||| | || |||||| ||||||| | || |||||||| | ||||| |
|
|
| T |
16861950 |
tacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctacacatggaggagtctttggag |
16862049 |
T |
|
| Q |
670 |
tactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtgg |
736 |
Q |
| |
|
|| ||||| |||||||| |||||| |||||||||||||||| ||||||| || || ||||||||| |
|
|
| T |
16862050 |
taaccaatcattacttacgttgggctatagatggaagattggtaatggttcaaatataaatgtgtgg |
16862116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 506 - 742
Target Start/End: Original strand, 50181482 - 50181718
Alignment:
| Q |
506 |
gaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttcccta |
605 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||| |||||||||| ||||| |||| |||||| ||||| | || |||||||||||||||||||| || |
|
|
| T |
50181482 |
gaagcattcaacctttctatgctcggtaagcaaagttggaaacttctatccgactcatcctctctattctcaaggatcctcaaagctaaatactttcccc |
50181581 |
T |
|
| Q |
606 |
tactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaa |
705 |
Q |
| |
|
| ||| || |||||||| | ||||| || ||||||||| ||| |||||||| |||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
50181582 |
gaagggattttttggatgccaatctcggccacaatccaagttatacatggaggagtctatggagtacgcaatctttacttaccttaggccatagatggaa |
50181681 |
T |
|
| Q |
706 |
gattggagatggttctaagattaatgtgtggagtatg |
742 |
Q |
| |
|
||||||| | |||||| | | ||||||||||| |||| |
|
|
| T |
50181682 |
gattggaaacggttctcaaaataatgtgtggaatatg |
50181718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 473 - 742
Target Start/End: Original strand, 20128247 - 20128516
Alignment:
| Q |
473 |
aaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttat |
572 |
Q |
| |
|
|||||||| |||||||||| |||| | || ||||||| |||||||| || ||||| || |||||||||||||||||| | || |||| ||| ||| |
|
|
| T |
20128247 |
aaaagtcttggtggccttggctttcgcaacatggaagcattcaatctttcaatgcttggtaagcaaggttggaaactcatgaccgactcaaactccttac |
20128346 |
T |
|
| Q |
573 |
tcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtac |
672 |
Q |
| |
|
|||| | | |||||||| |||||||| || |||| ||| |||||||| ||| | || |||||| ||||||| | ||||||||||| |||||||||| |
|
|
| T |
20128347 |
tcactcgtactctcaaagccaaatactttcccatacgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtctatggagtac |
20128446 |
T |
|
| Q |
673 |
tcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtggagtatg |
742 |
Q |
| |
|
|||||| | ||||| ||||| ||||||||||||||||| ||||| | || |||||| ||||||||||| |
|
|
| T |
20128447 |
ccaatctcttcttaccttgggacatagatggaagattggtgatggcacaaaaattaatatgtggagtatg |
20128516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 470 - 736
Target Start/End: Complemental strand, 12460254 - 12459988
Alignment:
| Q |
470 |
cacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctt |
569 |
Q |
| |
|
||||||||||| |||||||||| ||| | ||||||||||| |||||||| ||||||||||| |||||| ||||||||||| | | |||| || | |
|
|
| T |
12460254 |
cacaaaagtcttggtggccttggttttcgcaatttggaagcattcaatctttctatgctcggtaagcaaagttggaaactcatgacagactcaaattcct |
12460155 |
T |
|
| Q |
570 |
tattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggag |
669 |
Q |
| |
|
|| | || | |||||||||| ||||| |||||| || ||| |||||||| ||| | || |||||| ||||||| | ||| |||||||| | ||||| |
|
|
| T |
12460154 |
tacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggag |
12460055 |
T |
|
| Q |
670 |
tactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtgg |
736 |
Q |
| |
|
||| ||||| |||||||| |||||| |||||||||||||||| |||| || || || ||||||||| |
|
|
| T |
12460054 |
tacccaatcattacttacgttgggctatagatggaagattggtaatggctcaaaaataaatgtgtgg |
12459988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 434 - 720
Target Start/End: Complemental strand, 51493275 - 51492989
Alignment:
| Q |
434 |
ggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggca |
533 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| ||||| ||||||| ||||| || |||| | | |||||||||||||||| || |||||||| | |
|
|
| T |
51493275 |
ggcatcaattggatgaaatgggacaagctcactcttcataaaagtcgtggtggtctaagctttcgtgacatggaagctttcaatctctcaatgctcggta |
51493176 |
T |
|
| Q |
534 |
agcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcgg |
633 |
Q |
| |
|
||||| ||||||||||| | || |||| || ||| | || | |||||||||||||||||||||||| | |||| ||||||||||| | || || |
|
|
| T |
51493175 |
agcaaagttggaaactcctcaccgactcaaattccttacttactcgtgtcctcaaagctaaatacttccctagaatggatttcttggatgcccctcttgg |
51493076 |
T |
|
| Q |
634 |
tcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttc |
720 |
Q |
| |
|
||| ||||||| | | |||||| | | ||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
51493075 |
ccataatccaagctacgcatggaggggtctttggagcactcaatctttacttaccttgggtcatagatggaagattggagctggttc |
51492989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 584 - 720
Target Start/End: Original strand, 14647344 - 14647480
Alignment:
| Q |
584 |
ctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttac |
683 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||||| | || | |||| ||||||| | | |||||||| | ||||||||||||||| | | |
|
|
| T |
14647344 |
ctcaaagctaaatatttccctcgtcgggacttcttggatgcacctcttgatcataatccaagctacatatggaggagtctttggagtactcaatctctgc |
14647443 |
T |
|
| Q |
684 |
ttactttgggccatagatggaagattggagatggttc |
720 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
14647444 |
ttaccttgggtcatagatggaaaattggagatggttc |
14647480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 649 - 737
Target Start/End: Original strand, 27465620 - 27465708
Alignment:
| Q |
649 |
tacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtgga |
737 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| |||||| ||| |||||| ||||| ||||||||| | ||||||||||||| |
|
|
| T |
27465620 |
tacttggaagagtctatggagtactcaatctttacttattttgggtcatgaatggaaaattggtgatggttcttatattaatgtgtgga |
27465708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 470 - 738
Target Start/End: Original strand, 44138340 - 44138608
Alignment:
| Q |
470 |
cacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctt |
569 |
Q |
| |
|
||||||||| | || ||||| | |||| |||| |||||||||||||| | |||||||| || |||||| ||||||||||| | || | || || ||| |
|
|
| T |
44138340 |
cacaaaagtttgggaggcctcggctttcgaaacatggaagctttcaatttatctatgcttggtaagcaaagttggaaactcctttcagattcgtcttctc |
44138439 |
T |
|
| Q |
570 |
tattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggag |
669 |
Q |
| |
|
|| | || |||| |||||||||||||| ||||| | ||| ||||||||||| | ||||| ||| ||||||| | || ||||| ||| ||||||| |
|
|
| T |
44138440 |
tacttacacgaattctcaaagctaaatatttcccgcgaagggatttcttggatgcccctctcggccataatccaagctacacctggagaagcctatggag |
44138539 |
T |
|
| Q |
670 |
tactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtggag |
738 |
Q |
| |
|
| | ||| ||||||||| ||||| ||||||||||||||||| ||||||| | ||||| |||||||| |
|
|
| T |
44138540 |
tgcacaacatttacttaccttgggacatagatggaagattggttatggttcaagaattaaagtgtggag |
44138608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 321 - 556
Target Start/End: Original strand, 27465287 - 27465522
Alignment:
| Q |
321 |
caagtcatcccttcttactgtatgggagcctttctcatccctgcatcactttgtgaagaacttgagcggatgatgaattcattttactggggttcgnnnn |
420 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||||| | || | | ||||||| ||||| |||||||| |||| ||||| | |||||| |
|
|
| T |
27465287 |
caagtcatcccttcttattgtatgggtgccttcctcatccctacctccttatatgaagaaattgagtggatgatgtattccttttattagggttctaaaa |
27465386 |
T |
|
| Q |
421 |
nnntggttgacgaggcatcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctg |
520 |
Q |
| |
|
||||||| || |||||||||||||||||| || | ||| ||||||| |||||| |||| || ||| ||| ||||| ||||| ||| ||||| |
|
|
| T |
27465387 |
agaatgttgacgtggtatcaattggatgcattggaataaactcgcacttcataaaagtgtaggaggatttggcttccgaaatgtggaactttttaatcta |
27465486 |
T |
|
| Q |
521 |
tctatgctcggcaagcaaggttggaaactcttatcc |
556 |
Q |
| |
|
|| |||| | ||| |||||||||||||||||||| |
|
|
| T |
27465487 |
tcaatgcctagaaagtaaggttggaaactcttatcc |
27465522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 723
Target Start/End: Complemental strand, 13189657 - 13189544
Alignment:
| Q |
610 |
ggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagatt |
709 |
Q |
| |
|
|||||||||||||||| | | || ||| ||||||| | |||||||| || | |||||||||||| ||||||||| ||||| |||||||||| ||| |
|
|
| T |
13189657 |
ggacttcttggatgcacctattggccataatccaagctacacttggagaagtctttggagtactcaacatttacttaccttgggttatagatggaaaatt |
13189558 |
T |
|
| Q |
710 |
ggagatggttctaa |
723 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
13189557 |
ggagatggctctaa |
13189544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 504 - 550
Target Start/End: Original strand, 30839632 - 30839678
Alignment:
| Q |
504 |
tggaagctttcaatctgtctatgctcggcaagcaaggttggaaactc |
550 |
Q |
| |
|
|||||||||||||||| |||||||| || || ||||||||||||||| |
|
|
| T |
30839632 |
tggaagctttcaatctctctatgcttggtaaacaaggttggaaactc |
30839678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 52843484 - 52843402
Alignment:
| Q |
334 |
cttactgtatgggagcctttctcatccctgcatcactttgtgaagaacttgagcggatgatgaattcattttactggggttcg |
416 |
Q |
| |
|
||||||||||| | || |||||| ||||| | ||| || | |||||| | ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
52843484 |
cttactgtatgagcgcttttctcctccctacctcatttggggaagaaatagagcgcatgatgaattcattttattggggttcg |
52843402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 5e-34; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 506 - 756
Target Start/End: Complemental strand, 2500649 - 2500400
Alignment:
| Q |
506 |
gaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttcccta |
605 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||| ||||| |||| | ||||||| |||||||||||| || || |
|
|
| T |
2500649 |
gaagcatttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcc-caaagctaaatattttcccc |
2500551 |
T |
|
| Q |
606 |
tactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaa |
705 |
Q |
| |
|
| ||| || || ||||| | || || ||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2500550 |
gaagggattttttagatgccaatctaggccataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaa |
2500451 |
T |
|
| Q |
706 |
gattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaa |
756 |
Q |
| |
|
|||||||| || ||| | |||||||||||||||||| | ||||||||||| |
|
|
| T |
2500450 |
aattggagacggctctcaaattaatgtgtggagtatgccttggatccgcaa |
2500400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 588 - 720
Target Start/End: Complemental strand, 52966208 - 52966076
Alignment:
| Q |
588 |
aagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttac |
687 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||| | || || ||| ||||||| | || |||||||| | ||||| ||||||||||||||||| |
|
|
| T |
52966208 |
aagctaaatacttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttac |
52966109 |
T |
|
| Q |
688 |
tttgggccatagatggaagattggagatggttc |
720 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
52966108 |
cttgggtcatagatggaagattggagatggttc |
52966076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 437 - 720
Target Start/End: Complemental strand, 51141644 - 51141361
Alignment:
| Q |
437 |
atcaattggatgcattgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagc |
536 |
Q |
| |
|
|||||||||||| | ||||| || | || || ||||||||||| || ||||| | |||||| || ||||||||||||| || || |||||||| |||| |
|
|
| T |
51141644 |
atcaattggatgaaatgggaaaagttaaccctccacaaaagtcttggaggcctaggcttttgcgatatggaagctttcaacctttcaatgctcggtaagc |
51141545 |
T |
|
| Q |
537 |
aaggttggaaactcttatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtca |
636 |
Q |
| |
|
|| ||||||||| | | ||||| ||| ||| |||| | || |||||||| |||||||||||| | ||||||||||||||| | | ||||| |
|
|
| T |
51141544 |
aaaactggaaactcatgacaaactctaactccttactcactcgtattctcaaagccaaatacttccctcgtcgggacttcttggatgcccctattggtca |
51141445 |
T |
|
| Q |
637 |
tgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttc |
720 |
Q |
| |
|
| ||||||||| || ||||| | | ||||||||||||| | | ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
51141444 |
taatccaagttacacatggagaattctttggagtactcaatatctgcttaccttgggtcatagatggaagattggagatggttc |
51141361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 629 - 737
Target Start/End: Original strand, 2332407 - 2332514
Alignment:
| Q |
629 |
ctcggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagatta |
728 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| | ||||||||| || ||||||||| ||| |||||||||| ||||| ||||| ||||| |||| |
|
|
| T |
2332407 |
ctcggtcataatccaagctatacttggaggagtctttggagtact-aacatttacttaccttgtattatagatggaaaattggtgatggctctaaaatta |
2332505 |
T |
|
| Q |
729 |
atgtgtgga |
737 |
Q |
| |
|
||||||||| |
|
|
| T |
2332506 |
atgtgtgga |
2332514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 736
Target Start/End: Complemental strand, 24596158 - 24596087
Alignment:
| Q |
665 |
tggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtgg |
736 |
Q |
| |
|
|||||| | ||||||||||||||||||| || | |||||||||||| ||||||| || |||||||||||| |
|
|
| T |
24596158 |
tggagtgcccaatctttacttactttggaccttcgatggaagattgttaatggttcgaaaattaatgtgtgg |
24596087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 639 - 760
Target Start/End: Complemental strand, 4755751 - 4755630
Alignment:
| Q |
639 |
atccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtggag |
738 |
Q |
| |
|
||||||| | ||| |||||||| | |||||||| ||| |||||||| | |||||||||||||||||||| |||| |||||| || || |||||||| |
|
|
| T |
4755751 |
atccaagctatacatggaggagtctttggagtacccaaaatttacttatcataggccatagatggaagattggtgatgtttctaaaatcaacgtgtggag |
4755652 |
T |
|
| Q |
739 |
tatgacgtggatccgcaacctt |
760 |
Q |
| |
|
|| | |||||| |||||||| |
|
|
| T |
4755651 |
aataccttggatctgcaacctt |
4755630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 679 - 760
Target Start/End: Original strand, 6864533 - 6864613
Alignment:
| Q |
679 |
tttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtggagtatgacgtggatccgcaacctt |
760 |
Q |
| |
|
||||||||| | |||| |||| ||||||| || ||||||||||| || ||||||||||||||| | |||||||| |||||| |
|
|
| T |
6864533 |
tttacttaccataggccttagaaggaagatcggtgatggttctaa-atcaatgtgtggagtatgccatggatccgtaacctt |
6864613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 650 - 735
Target Start/End: Complemental strand, 39695324 - 39695239
Alignment:
| Q |
650 |
acttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtg |
735 |
Q |
| |
|
||||||||||| | |||||||||||| | ||||| |||||| |||| |||||||||||| || || ||||| ||||||||||| |
|
|
| T |
39695324 |
acttggaggagtctttggagtactcaacaatgacttattttgggtcatatatggaagattggtgacggctctaaaattaatgtgtg |
39695239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 470 - 736
Target Start/End: Complemental strand, 1146 - 880
Alignment:
| Q |
470 |
cacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactcttatccaactcctcctctt |
569 |
Q |
| |
|
||||||||||| |||||||||| ||| | ||||||||||| |||||||| ||||||||||| |||||| ||||||||||| | | |||| || | |
|
|
| T |
1146 |
cacaaaagtcttggtggccttggttttcgcaatttggaagcattcaatctttctatgctcggtaagcaaagttggaaactcatgacagactcaaattcct |
1047 |
T |
|
| Q |
570 |
tattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtacttggaggagcttatggag |
669 |
Q |
| |
|
|| | || | |||||||||| ||||| |||||| || ||| |||||||| ||| | || |||||| ||||||| | ||| |||||||| | ||||| |
|
|
| T |
1046 |
tacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggag |
947 |
T |
|
| Q |
670 |
tactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtgg |
736 |
Q |
| |
|
|| ||||| |||||||| |||||| |||||||||||||||| ||||||| || || ||||||||| |
|
|
| T |
946 |
tatccaatcattacttacgttgggctatagatggaagattggtaatggttcaaatataaatgtgtgg |
880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 639 - 753
Target Start/End: Complemental strand, 189680 - 189566
Alignment:
| Q |
639 |
atccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttctaagattaatgtgtggag |
738 |
Q |
| |
|
||||||||| ||| |||||||| | | |||||||||||||||||| || ||||| |||||||||| |||||| |||||||| | |||||||||| ||| |
|
|
| T |
189680 |
atccaagttttacatggaggagtcttttgagtactcaatctttactcaccttgggacatagatggatgattggtgatggttcccaaattaatgtgtcgag |
189581 |
T |
|
| Q |
739 |
tatgacgtggatccg |
753 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
189580 |
tatgtcgtggatccg |
189566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 632 - 717
Target Start/End: Original strand, 4243151 - 4243235
Alignment:
| Q |
632 |
ggtcatgatccaagttgtacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatgg |
717 |
Q |
| |
|
|||||| ||||||| | ||| |||||||| ||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |
|
|
| T |
4243151 |
ggtcataatccaagctatacatggaggagtctatggagtactcaatctttgctcactttgggtcatagatggaa-attggagatgg |
4243235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 452 - 705
Target Start/End: Original strand, 647122 - 647375
Alignment:
| Q |
452 |
tgggattagctcacacttcacaaaagtctaggtggccttgccttttgaaatttggaagctttcaatctgtctatgctcggcaagcaaggttggaaactct |
551 |
Q |
| |
|
|||||| ||||||| | |||||||||| |||||||| | |||| | ||| |||||||||||||||| || ||||| || |||||| | ||||||||| |
|
|
| T |
647122 |
tgggataagctcactccacacaaaagtcagggtggcctaggctttcgtaatatggaagctttcaatctctcaatgcttggtaagcaaagctggaaactcc |
647221 |
T |
|
| Q |
552 |
tatccaactcctcctctttattcaccagaatcctcaaagctaaatacttccctatactggacttcttggatgcaaccctcggtcatgatccaagttgtac |
651 |
Q |
| |
|
|| || |||| || || | || | |||||||||| ||||||||||||| || || |||||||| || | || || || | ||||| | || |
|
|
| T |
647222 |
taaccgactctaattccatacttactcgcgtcctcaaagccaaatacttccctagacgagatttcttggaggcccctctgggccacaacccaagctacac |
647321 |
T |
|
| Q |
652 |
ttggaggagcttatggagtactcaatctttacttactttgggccatagatggaa |
705 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
647322 |
ttggaggagtctatggagtactcaatctttacttacattgggatatagatggaa |
647375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 650 - 720
Target Start/End: Complemental strand, 237982 - 237912
Alignment:
| Q |
650 |
acttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttc |
720 |
Q |
| |
|
|||||||||||| |||||||| |||||||| | || || |||||| |||||||||||||||| || ||||| |
|
|
| T |
237982 |
acttggaggagcatatggagttctcaatctcttctaaccttgggctatagatggaagattggtgacggttc |
237912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University