View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9134_low_10 (Length: 213)
Name: NF9134_low_10
Description: NF9134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9134_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2516059 - 2515864
Alignment:
| Q |
1 |
caccttggtagtcatcttttttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttag |
100 |
Q |
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| T |
2516059 |
caccttggtagtcatcttttttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttag |
2515960 |
T |
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| Q |
101 |
agaataaaagcatttacttccttttctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcgttcac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2515959 |
agaataaaagcatttacttccttttctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcattcac |
2515864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 2496446 - 2496344
Alignment:
| Q |
36 |
atatgatgagac-tgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttccttttctgcattgt |
134 |
Q |
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|||||||||||| ||||||||||||| | ||||||||||| |||| | ||| ||||||||| |||| ||||||||||||| ||| | ||| |||||||| |
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| T |
2496446 |
atatgatgagacctgtgttcctgatagttcagggagctgtataatgtatta--gtgttattgatagaaaataaaagcatttgcttgcctttgtgcattgt |
2496349 |
T |
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| Q |
135 |
catct |
139 |
Q |
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||||| |
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| T |
2496348 |
catct |
2496344 |
T |
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