View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9134_low_5 (Length: 375)
Name: NF9134_low_5
Description: NF9134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9134_low_5 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 2516415 - 2516041
Alignment:
| Q |
1 |
tggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaaggtttcaccgtagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516415 |
tggaatgatctcacagtataatcttactcaacctgaaggtgtcacaaatttggcacatatcatatataagcggattcgtatgcaaggtttcaccgtagct |
2516316 |
T |
|
| Q |
101 |
aattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516315 |
aattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgaga |
2516216 |
T |
|
| Q |
201 |
aaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516215 |
aaggtcctgcagccttggttggcatctttagcggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgtt |
2516116 |
T |
|
| Q |
301 |
ttgttatgttgtcaattttttcaaatcctttctagaaagtttagctgtctttataccaccttggtagtcatcttt |
375 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516115 |
ttgttatgttgtcaattttttcaaatcttttctagaaagtttagctgtctttataccaccttggtagtcatcttt |
2516041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 2512144 - 2511870
Alignment:
| Q |
1 |
tggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaaggtttcaccgtagct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |
|
|
| T |
2512144 |
tggaatgatctcacagtacaatcttactcaacctgaaggtgtaacaaatttggcacatatcatatataagcggattcgtttgcaaggttttgtcgtagtt |
2512045 |
T |
|
| Q |
101 |
aattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgaga |
200 |
Q |
| |
|
|||| ||||||||||| |||| |||||||| || |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2512044 |
gattactatcatctatatgccaagttcttagacttcgtcctgcctcatatcagagaagggaaggttgtgtatgtggaagacatagctgagggtcttgaga |
2511945 |
T |
|
| Q |
201 |
aaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
275 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2511944 |
aaggtcctgcagctttggttggcatatttagtggtaaaaatgttggcaaacaagtgcttgttgttgctcgtgaat |
2511870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 2496842 - 2496467
Alignment:
| Q |
1 |
tggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaagg-tttcaccgtagc |
99 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| ||| |||| ||| || || || |
|
|
| T |
2496842 |
tggaatgatctcacagtacaatcttacgcaacctgaagctgtaacgaatttggcacatatcatatataagcggattcgcatggaagggtttaacagt-gc |
2496744 |
T |
|
| Q |
100 |
taattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgag |
199 |
Q |
| |
|
| ||| | ||| ||| | | ||||| || ||||||||||| |||||||| ||||| || | | |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
2496743 |
tgatttctttcacctaaatcctaaattgttggagtttgtcctccctcatatcagagatgggaagattgtgtatgttgaagacataactgagggtcttgag |
2496644 |
T |
|
| Q |
200 |
aaaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgt |
299 |
Q |
| |
|
|| || |||||||||||| ||||| | | ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
2496643 |
aatggccctgcagccttgattggcctatatagtggtcgcaatgttggtaaacaagtggttgtcgttgctcgggaatagaaagcatttgcttttcctatgt |
2496544 |
T |
|
| Q |
300 |
attgttatgttgtcaatt-ttttcaaatcctttctagaaagtttagctgtctttataccaccttggtagtcatcttt |
375 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| ||||| |||||| ||||||| |||||| || | |||||||||| |
|
|
| T |
2496543 |
attgttatgttgtcaatttttttcaaatcttttatagaatgtttagttgtctttgtaccacttttgcagtcatcttt |
2496467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 2505523 - 2505249
Alignment:
| Q |
1 |
tggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaaggtttcaccgtagct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||||||||| | |||||| |
|
|
| T |
2505523 |
tggaatgatctcacagtacaatcttactcaacctgaaggtgtgacaaatttggcacatatcgtatataagcgggtccgtttgcaaggttttattgtagct |
2505424 |
T |
|
| Q |
101 |
aattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgaga |
200 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2505423 |
gattactatcatctatacggaaaattcttggagtttgtcctgcctcatatcagagaagggaaggttgtgtatgtagaagacatagctgagggtcttgaga |
2505324 |
T |
|
| Q |
201 |
aaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
275 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2505323 |
aaggccctgaagccttggttggcatatttagtggcaaaaatgttggcaaacaagtgcttgttgttgctcgtgaat |
2505249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 2429597 - 2429865
Alignment:
| Q |
1 |
tggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaaggtttcaccgtagct |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||| | ||| | |
|
|
| T |
2429597 |
tggaatgatctcacagtacaatcttactcaacctgaaggtgtcacaaatttggcacatatcatatataagcggatccggatggaaggttttgctgtattt |
2429696 |
T |
|
| Q |
101 |
aattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgaga |
200 |
Q |
| |
|
| || |||||||| || || |||||||| |||||| | ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2429697 |
gaatactatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttgaga |
2429796 |
T |
|
| Q |
201 |
aaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctc |
269 |
Q |
| |
|
| || |||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2429797 |
atggccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctc |
2429865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 2435940 - 2436214
Alignment:
| Q |
1 |
tggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaaggtttcaccgtagct |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || | ||||| || || |
|
|
| T |
2435940 |
tggaatgatctcacagtacaatcttactcaacctgaaggtgtcacaaatttggcacaaatcatatataagcggattcggatcgagggttttgttatatct |
2436039 |
T |
|
| Q |
101 |
aattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgaga |
200 |
Q |
| |
|
|||| | ||| || || || |||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2436040 |
gattactttcacctttatacaaaattcttggagtttgtcctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttgaga |
2436139 |
T |
|
| Q |
201 |
aaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
275 |
Q |
| |
|
| |||||||| || ||| ||||| | | |||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2436140 |
atggtcctgctgcattgattggcctatatagtggtcgcaatgttggtaaacaagtggttgctgttgctcatgaat |
2436214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 2432579 - 2432853
Alignment:
| Q |
1 |
tggaatgatctcacagtataatcttactcaacctgaaggtgtcgcaaatttggcacatatcatatataagcggattcgtatgcaaggtttcaccgtagct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| | | ||||| || || |
|
|
| T |
2432579 |
tggaatgatctcacagtataatctcactcaacctgaaggtgtcacaaatttggcacaaatcatatataagcggattcggttcgagggttttgttatatct |
2432678 |
T |
|
| Q |
101 |
aattattatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgaga |
200 |
Q |
| |
|
|||| | ||| || || || |||||||| || ||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432679 |
gattactttcacctttatacaaaattcttggaatttgtcctgcctcttataagagaaggaaagattgtgtatgtggaagacatagctgagggtcttgaga |
2432778 |
T |
|
| Q |
201 |
aaggtcctgcagccttggttggcatctttagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
275 |
Q |
| |
|
| |||||||| || ||| ||||| | | |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2432779 |
atggtcctgctgcattgattggcctatacagtggtcgcaatgttggtaaacaagtggttgttgttgctcatgaat |
2432853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University