View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9134_low_6 (Length: 343)
Name: NF9134_low_6
Description: NF9134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9134_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 127 - 328
Target Start/End: Complemental strand, 56069644 - 56069439
Alignment:
| Q |
127 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
56069545 |
T |
|
| Q |
227 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacac----tataatggaaatatgaaaccatggatcgagataagtattcaaaagt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
56069544 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactatatataatggaaatatgaaaccatggctcgagataagtattcaaaagt |
56069445 |
T |
|
| Q |
323 |
ttcaag |
328 |
Q |
| |
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|||||| |
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| T |
56069444 |
ttcaag |
56069439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 56069799 - 56069678
Alignment:
| Q |
1 |
accacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaatttctcgtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069799 |
accacaaatggcagaaactggtaagcacacttta----atttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaatttctcgtttc |
56069704 |
T |
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| Q |
101 |
tttccaatttcatcgacgatgtttcc |
126 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
56069703 |
tttccaatttcatcgacgatttttcc |
56069678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 314
Target Start/End: Original strand, 38398695 - 38398880
Alignment:
| Q |
127 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
226 |
Q |
| |
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|||| ||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggctac |
38398794 |
T |
|
| Q |
227 |
aaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactataatggaaatatgaaaccatggatcgagataagtat |
314 |
Q |
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||||| ||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| | ||||||||||| |
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| T |
38398795 |
aaccccaatgtcaaccaaaaagatattgaaagggctgctgtaat--tcactataacggaaacttgaaaccgtggctggagataagtat |
38398880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38398519 - 38398594
Alignment:
| Q |
1 |
accacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
81 |
Q |
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||||||| |||||||| |||||||| |||||||| || |||||||||||||| | |||||||||||| |||||||||| |
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| T |
38398519 |
accacaattggcagaagctggtaag-acacttta----atctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 316
Target Start/End: Original strand, 10171013 - 10171193
Alignment:
| Q |
134 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctacaaccctg |
233 |
Q |
| |
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||||| ||||||||||||||||| ||||| || || |||||||||| |||||||| |||||| | | ||||| || ||||||||||||||||| || |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaacaaagcgtggcatgtgttgggtcttggctacaatccca |
10171112 |
T |
|
| Q |
234 |
atgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactataatggaaatatgaaaccatggatcgagataagtattc |
316 |
Q |
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| ||||||||||||||||| || | |||||||| || ||||| ||||| || ||||| |||||| | ||||||||||||| |
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| T |
10171113 |
acgtcaaccaaaaagatattgatcgggctgctgt--tatgcactacaatgggaacatgaagccatggttggagataagtattc |
10171193 |
T |
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