View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_high_18 (Length: 249)
Name: NF9135_high_18
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 48068787 - 48068568
Alignment:
| Q |
14 |
agagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaac |
113 |
Q |
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| T |
48068787 |
agagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacggtgtttgagcatggaacaatcaaggaacgaac |
48068688 |
T |
|
| Q |
114 |
atcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48068687 |
atcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatatt |
48068588 |
T |
|
| Q |
214 |
ttttctggtaacctatgttt |
233 |
Q |
| |
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|||||||||||||||||||| |
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| T |
48068587 |
ttttctggtaacctatgttt |
48068568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 48064131 - 48063920
Alignment:
| Q |
14 |
agagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaac |
113 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||| ||||||||| |
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| T |
48064131 |
agagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttggaaatggaacaatcgaggaacgaat |
48064032 |
T |
|
| Q |
114 |
atcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatatt |
213 |
Q |
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||||||||||| ||||| ||| ||||||| |||||||||| |||| |||| ||| |||| ||||| || ||||||||| |||||| ||||||||| || |
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| T |
48064031 |
atcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatatacatg |
48063932 |
T |
|
| Q |
214 |
ttttctggtaac |
225 |
Q |
| |
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|||||||||||| |
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| T |
48063931 |
ttttctggtaac |
48063920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 48101384 - 48101165
Alignment:
| Q |
14 |
agagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaac |
113 |
Q |
| |
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|||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| || | |||| |||||||| ||||||||||| |||||||| |
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| T |
48101384 |
agagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagt |
48101285 |
T |
|
| Q |
114 |
atcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatatt |
213 |
Q |
| |
|
|||||| | ||||||| ||| ||||||| ||||||||||||||||||||| |||||||| ||||| || ||||||||| |||||| ||||||||||| | |
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|
| T |
48101284 |
atcaaacaacggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatact |
48101185 |
T |
|
| Q |
214 |
ttttctggtaacctatgttt |
233 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
48101184 |
ttttctggtaacctatgttt |
48101165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 48107798 - 48107589
Alignment:
| Q |
16 |
agagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaacat |
115 |
Q |
| |
|
||||||||||||||||| || |||||||||||| | ||||||||||||||||| ||| ||||||||| |||| |||||||||| ||||||| | || |
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|
| T |
48107798 |
agagcacaatatggagggggaattatagtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatat |
48107699 |
T |
|
| Q |
116 |
caaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatatttt |
215 |
Q |
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|
||||||||||||||| ||| ||||||| |||||| ||||||||| ||||||||||||| ||||||| || || || ||||||| | ||||||||| ||| |
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| T |
48107698 |
caaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattgatatatacttt |
48107599 |
T |
|
| Q |
216 |
ttctggtaac |
225 |
Q |
| |
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||| |||||| |
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|
| T |
48107598 |
ttcaggtaac |
48107589 |
T |
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