View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9135_high_21 (Length: 233)
Name: NF9135_high_21
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 4715532 - 4715334
Alignment:
| Q |
19 |
agaattttcctattttgatatctttttgcctcagtgtatttatagttcgatttgatagatttgataattaaccaaaattaacggtgtaaacaataatata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4715532 |
agaattttcctattttgatatctttttgcctcagtgtatttatagttcgatttgatagatttgataattaaccaaaatttacggtgtaaacaataatata |
4715433 |
T |
|
| Q |
119 |
tggatgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715432 |
tggatgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
4715334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 4790093 - 4790026
Alignment:
| Q |
150 |
aagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4790093 |
aagtctttggaacattttggcatctaagataattaaagcatagtcacgcagaaagctcgaaaacgtct |
4790026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 4818477 - 4818411
Alignment:
| Q |
151 |
agtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4818477 |
agtctttggaacattttggcatctaagataattagagcatagtcacgcagaaagctccaaaacgtct |
4818411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 4701103 - 4700971
Alignment:
| Q |
86 |
ttaaccaaaattaacggtgtaaacaataatata---tggatgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataat |
182 |
Q |
| |
|
||||||||| | |||||||||| || |||||| ||||||| ||||| || ||||||||||||||||||||| |||| |||||| ||||||||||| | |
|
|
| T |
4701103 |
ttaaccaaatatcacggtgtaaagaacaatataaagtggatgcccgagtgaatacgaagacttggtgaagtctttggaatattttgccatctaagatatt |
4701004 |
T |
|
| Q |
183 |
taaagcatagtcacgcagaaagctccaaaacgtct |
217 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |
|
|
| T |
4701003 |
taaa--atagtcacagagaaagctccaaaacgtct |
4700971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 4704524 - 4704432
Alignment:
| Q |
123 |
tgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||||| || || | ||||||| ||||||| ||||||||||| |
|
|
| T |
4704524 |
tgctcgagtgaagacgaagacttggtgaagtctttggaatattttggtatcaaagatattttaa--acagtcacggagaaagcaccaaaacgtct |
4704432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 4790146 - 4790098
Alignment:
| Q |
59 |
tatagttcgatttgatagatttgataattaaccaaaattaacggtgtaa |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4790146 |
tatagttcgatttgatagattttataattaaccaaaatttacggtgtaa |
4790098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 4834120 - 4834062
Alignment:
| Q |
122 |
atgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagata |
180 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4834120 |
atgcccgagtgaagacgaagacttggtgaagtctttagaatattttggcatctaagata |
4834062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 4705940 - 4705898
Alignment:
| Q |
119 |
tggatgctcgagtaaagacgaagacttggtgaagtcttaggaa |
161 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
4705940 |
tggatgctcgagtgaagacgaagacttggtgaagtctttggaa |
4705898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 4788823 - 4788728
Alignment:
| Q |
123 |
tgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataat---taaagcatagtcacgcagaaagctccaaaacgtct |
217 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| |||| |||||| ||| |||||| | ||||||| |||| | ||||||||||||||||||| |
|
|
| T |
4788823 |
tgctcaagtgaagacgaagacttggtgaagtctttggaatgttttggtatccaagatagtatttaaagca--gtcaggaagaaagctccaaaacgtct |
4788728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University