View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_low_11 (Length: 520)
Name: NF9135_low_11
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 43586601 - 43586303
Alignment:
| Q |
20 |
agtactactaattttttgggttaatatacagattagaaataaattaataaaatggctgtatttattatttatgcttactttatattgagcaatatatcgt |
119 |
Q |
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| T |
43586601 |
agtactactaattttttgggttaatatacagattataaataaattaataaaatggctgtatttattatttatgcttactttatattgagcaatatatcgt |
43586502 |
T |
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| Q |
120 |
tgcattttcattccatgtgatgtaggtcgtgattcaacaattaccagagtggaaaggacatgaatggaaatatgaaaaggatgatgatgatgagtcagca |
219 |
Q |
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| T |
43586501 |
tacattttcattccatgtgatgtaggtcgtgattcaacaattaccagagtggaaaggacatgaatggaaatatgaaaaggatgatg---atgagtcagca |
43586405 |
T |
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| Q |
220 |
gagtctttgtgaggaaaatctctactgtaaatcgtcaagataatatttgatatttgcttgtaatagaagttgtatatctttgttagaattttcatattct |
319 |
Q |
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| T |
43586404 |
gagtctttgtgaggaaaatctctactgtaaatcgtcaagataatatttgatatttgcttgtaatagaagttgtatatctttgttagaattttcatattct |
43586305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 357 - 506
Target Start/End: Complemental strand, 43586236 - 43586091
Alignment:
| Q |
357 |
cttttatgttttcacactttctcaaaatttatctacaggaaatattacatattacatagatagaagaaatattgaatgatttcattgattgatttgtaaa |
456 |
Q |
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| T |
43586236 |
cttttatgttttcacactttctcaaaatttatctacagaaaatagtacatatta----gatagaagaaatattgaatgatttcattgattgatttgtaaa |
43586141 |
T |
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| Q |
457 |
ttatagaaaagggtccttttctatgaagcacagacacatacatgaacacc |
506 |
Q |
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| T |
43586140 |
tgatagaaaagggtcattttctatgaagcacagacacatacatggacacc |
43586091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 43586278 - 43586239
Alignment:
| Q |
330 |
gtaacattgtttatcacatttctttctcttttatgttttc |
369 |
Q |
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| T |
43586278 |
gtaacattgtttatcacatttctttctcttttatgttttc |
43586239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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