View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_low_14 (Length: 512)
Name: NF9135_low_14
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 6233910 - 6233423
Alignment:
| Q |
1 |
tgtgaccattgcaacgtatgtgaaattttacgaatgttgtccttatataacagtttacatcaaccaatattgctaaaacaaaatatgaaatttatatgtt |
100 |
Q |
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| T |
6233910 |
tgtgaccattgcaacgtatgtgaaattttacgaatgttgtccttatataacagtttacatcaaccaatattgctaaaacaaaatataaaatttatatgtt |
6233811 |
T |
|
| Q |
101 |
tatgagtcaaaattttgtatattatcattgatcaatgcatttgatgtgagtttgtaattcataacaagatttccaaagtatctcgtttgtaattcatgac |
200 |
Q |
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| T |
6233810 |
tatgagtcaaaattttgtaaattatcattgatcaatgcatttgatgtgagtttgtaattcataacaagatttccaaagtatctcgtttgtaattcatgac |
6233711 |
T |
|
| Q |
201 |
aagatttccaaggtagcaccttatgcaaatcactcctttgcttaagggagtaactatcttcgttcacacgtaacctcaataggttgttatttaactaaac |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6233710 |
aagatttctaaggtagcaccttatgcaaatcactcctttgcttaagggagtaactatcttcgttcacacgtaacctcaataggttgttatttaactaaac |
6233611 |
T |
|
| Q |
301 |
atgttttaccaaactagtacagtaatactagttgattaaca-nnnnnnnaggggagttattaacaataattgtattttaaattaataaacttctttgtaa |
399 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6233610 |
atgttttaccaaactagtacagtaatactagtt-attaacattttttttaggagagttattaacaataattgtattttaaattaataaacttctttgtaa |
6233512 |
T |
|
| Q |
400 |
caaaaattacattattgaattccaaaaatccacacctaaaattggcaaaagagaatgattcattaattcaatattttaatcagggtata |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6233511 |
caaaaattacattattgaattccaaaaatccacacctaaaattggcaaaagagaatgattcattaattcaatattttaatcagggtata |
6233423 |
T |
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