View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9135_low_15 (Length: 511)

Name: NF9135_low_15
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9135_low_15
NF9135_low_15
[»] chr6 (10 HSPs)
chr6 (250-399)||(24950279-24950428)
chr6 (96-159)||(24950149-24950212)
chr6 (256-315)||(6921506-6921565)
chr6 (258-312)||(6943112-6943166)
chr6 (256-312)||(6935374-6935430)
chr6 (260-324)||(6954679-6954743)
chr6 (256-314)||(6948036-6948094)
chr6 (97-159)||(14749399-14749461)
chr6 (366-408)||(24955807-24955849)
chr6 (258-315)||(20770505-20770562)
[»] chr7 (18 HSPs)
chr7 (432-499)||(24383786-24383853)
chr7 (196-323)||(24391252-24391379)
chr7 (258-315)||(14076550-14076607)
chr7 (258-315)||(14386578-14386635)
chr7 (244-320)||(24385042-24385118)
chr7 (256-315)||(13417079-13417138)
chr7 (97-159)||(660853-660915)
chr7 (97-159)||(29454109-29454171)
chr7 (97-154)||(24385208-24385265)
chr7 (437-482)||(24391081-24391126)
chr7 (100-155)||(20414888-20414943)
chr7 (256-306)||(1986111-1986161)
chr7 (97-159)||(19344581-19344643)
chr7 (98-159)||(19722020-19722081)
chr7 (437-482)||(24384862-24384907)
chr7 (447-483)||(20456192-20456228)
chr7 (447-483)||(21210758-21210794)
chr7 (107-159)||(29899376-29899428)
[»] chr2 (7 HSPs)
chr2 (97-159)||(18908815-18908877)
chr2 (97-159)||(18913563-18913625)
chr2 (97-159)||(18920771-18920833)
chr2 (258-315)||(20712691-20712748)
chr2 (268-324)||(20967546-20967602)
chr2 (109-159)||(10205462-10205512)
chr2 (97-158)||(14514903-14514964)
[»] scaffold0097 (1 HSPs)
scaffold0097 (258-315)||(16530-16587)
[»] chr4 (6 HSPs)
chr4 (97-159)||(53774842-53774904)
chr4 (18-57)||(10464412-10464451)
chr4 (97-159)||(35767020-35767082)
chr4 (97-159)||(837778-837840)
chr4 (97-155)||(3565750-3565808)
chr4 (252-288)||(10467925-10467961)
[»] chr1 (3 HSPs)
chr1 (100-158)||(4014974-4015032)
chr1 (97-159)||(4570929-4570991)
chr1 (98-155)||(39379068-39379125)
[»] chr5 (1 HSPs)
chr5 (98-159)||(28763912-28763973)
[»] chr3 (1 HSPs)
chr3 (97-155)||(3625740-3625798)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 24950279 - 24950428
Alignment:
Q  250 agaacctcgagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaaattctcaacggtatagttattccaatcatatgta 349  Q
    ||||||||||||| ||||||||||| |||||||||| |||| | ||||||| ||||||||| ||||||||||||| ||||  ||||||||||||||||||    
T  24950279 agaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatgatcgcaaaattctcaacagtatgattattccaatcatatgta 24950378  T
Q  350 atatcctttcgaatgaccaaccagttaagagttccgctcaaataaacaca 399  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| |||||    
T  24950379 atatcatttcgaatgaccaaccaattaagagttccgctcaaatacacaca 24950428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 24950149 - 24950212
Alignment:
Q  96 caattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  24950149 caattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaa 24950212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 6921506 - 6921565
Alignment:
Q  256 tcgagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaa 315  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  6921506 tcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaa 6921565  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 6943112 - 6943166
Alignment:
Q  258 gagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcac 312  Q
    ||||||||||||||| ||| |||||||| |||||||||||||| ||||| |||||    
T  6943112 gagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagatcatcac 6943166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 6935374 - 6935430
Alignment:
Q  256 tcgagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcac 312  Q
    ||||||||||||||||| |||  ||||||| |||||||||||||| ||||| |||||    
T  6935374 tcgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcac 6935430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 6954679 - 6954743
Alignment:
Q  260 gggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaaattctcaac 324  Q
    ||||||||||| ||||| |||||||| |||| || |||||| |||||||||||||| || |||||    
T  6954679 gggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaac 6954743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 6948036 - 6948094
Alignment:
Q  256 tcgagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaa 314  Q
    |||||||||||||||  |||| ||| |||| |||||||||||||| ||||| |||||||    
T  6948036 tcgagggagcaacaaccgtgtatatctctctgtccccaaatcaagtgagatcatcacaa 6948094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 14749461 - 14749399
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||| ||||||||| |||||||||||| ||| ||||| | ||||||| |||||| ||||||    
T  14749461 aattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaa 14749399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 408
Target Start/End: Original strand, 24955807 - 24955849
Alignment:
Q  366 ccaaccagttaagagttccgctcaaataaacacaaccgtagca 408  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||    
T  24955807 ccaaccagttaagagatccgctcaaatacacacaactgtagca 24955849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 20770562 - 20770505
Alignment:
Q  258 gagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaa 315  Q
    ||||||| ||||| ||| ||||||||||  || |||||||||| ||||||||||||||    
T  20770562 gagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaa 20770505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 24383853 - 24383786
Alignment:
Q  432 tatctggaaaacttggaatacttttccaaatattatcacccaaactaaaaatccttgcatctctgctc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24383853 tatctggaaaacttggaatacttttccaaatattatcacccaaactaaaaatccttgcatctctgctc 24383786  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 196 - 323
Target Start/End: Complemental strand, 24391379 - 24391252
Alignment:
Q  196 acaaagacaatccatgaacacacaaatgcttgggtcagttaagaacttttcaccagaacctcgagggagcaacaattgtgtgtatgtctcagtccccaaa 295  Q
    |||||| |||||||||| |||||||||| |||  ||| | || |||  |||||  ||| ||| |||| ||||||||||||||||||||||  ||||||||    
T  24391379 acaaaggcaatccatgagcacacaaatggttgactcattcaacaacacttcacgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaa 24391280  T
Q  296 tcaagcgagatgatcacaaaattctcaa 323  Q
    ||||| ||||||||| || ||| |||||    
T  24391279 tcaagtgagatgatcgcataatgctcaa 24391252  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 14076607 - 14076550
Alignment:
Q  258 gagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaa 315  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  14076607 gagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaa 14076550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 14386635 - 14386578
Alignment:
Q  258 gagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaa 315  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  14386635 gagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaa 14386578  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 24385118 - 24385042
Alignment:
Q  244 ttcaccagaacctcgagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaaattct 320  Q
    |||| |||||||| ||||| ||||||||||||||||| |||| |||||||||| ||| |||||||||| | ||||||    
T  24385118 ttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatgatcatataattct 24385042  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 13417079 - 13417138
Alignment:
Q  256 tcgagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaa 315  Q
    |||||| |||||||| ||||| ||||||||||||||||| |||| |||||| ||||||||    
T  13417079 tcgaggtagcaacaactgtgtatatgtctcagtccccaactcaaccgagataatcacaaa 13417138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 660853 - 660915
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||||||||||||| |||||||||||||||| | ||| | | |||||| ||||||||||||    
T  660853 aattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaa 660915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 29454109 - 29454171
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||||| ||||||| ||||||| |||||||| ||||| |||||||||  ||||||||||||    
T  29454109 aattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaa 29454171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 24385265 - 24385208
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatata 154  Q
    ||||||||| ||| |||||||||||| |||||| ||||| ||| ||||||||||||||    
T  24385265 aattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 24385208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 24391126 - 24391081
Alignment:
Q  437 ggaaaacttggaatacttttccaaatattatcacccaaactaaaaa 482  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||    
T  24391126 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaa 24391081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 20414943 - 20414888
Alignment:
Q  100 tttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 155  Q
    ||||||||||||| |||||||||  ||| | ||||| |||||||||||||||||||    
T  20414943 tttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataa 20414888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 1986111 - 1986161
Alignment:
Q  256 tcgagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagat 306  Q
    ||||||||||||||| ||||| ||| |||| |||||||||||||| |||||    
T  1986111 tcgagggagcaacaactgtgtatatctctctgtccccaaatcaagtgagat 1986161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 19344581 - 19344643
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    ||||||||| |||||| ||||||| | |||||| ||||| | |||||||| ||||||||||||    
T  19344581 aattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaa 19344643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 19722081 - 19722020
Alignment:
Q  98 attttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    ||||| ||||||||| ||||||| |||| ||| ||||| | |||||||||||||| ||||||    
T  19722081 attttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaa 19722020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 24384907 - 24384862
Alignment:
Q  437 ggaaaacttggaatacttttccaaatattatcacccaaactaaaaa 482  Q
    ||||||||| |||||||| ||||||||| ||| |||||||||||||    
T  24384907 ggaaaactttgaatacttctccaaatatcatctcccaaactaaaaa 24384862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 20456228 - 20456192
Alignment:
Q  447 gaatacttttccaaatattatcacccaaactaaaaat 483  Q
    |||||||| |||||| |||||||||||||||||||||    
T  20456228 gaatacttctccaaacattatcacccaaactaaaaat 20456192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 483
Target Start/End: Original strand, 21210758 - 21210794
Alignment:
Q  447 gaatacttttccaaatattatcacccaaactaaaaat 483  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  21210758 gaatagttttccaaatattatcacctaaactaaaaat 21210794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 29899428 - 29899376
Alignment:
Q  107 aattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||| |||| ||||||||||| ||||| ||| |||||| ||||||||||||    
T  29899428 aattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaa 29899376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 18908815 - 18908877
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18908815 aattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18908877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 18913563 - 18913625
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18913563 aattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18913625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 18920771 - 18920833
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18920771 aattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18920833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 20712691 - 20712748
Alignment:
Q  258 gagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaa 315  Q
    |||||||||||| |||||||||||||||  |||||||||| || ||||||||||||||    
T  20712691 gagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaa 20712748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 20967602 - 20967546
Alignment:
Q  268 caattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaaattctcaac 324  Q
    |||||||||||| ||||| |||||||||||||| || ||||||||||| | ||||||    
T  20967602 caattgtgtgtaggtctctgtccccaaatcaagggaaatgatcacaaattgctcaac 20967546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 10205462 - 10205512
Alignment:
Q  109 ttgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||| |||||||||||||||||||| |||   |||||||||||||||||||    
T  10205462 ttgagtccaagactcttcaacaccatactcagtcatcttccatataacaaa 10205512  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 14514964 - 14514903
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcat-catcttccatataacaa 158  Q
    |||||||||||||||| ||||||| |||||||| ||||| ||||| ||| |||||||||||||    
T  14514964 aattttaaggaattgagtccaagaatcttcaactccaaa-ttcatccattttccatataacaa 14514903  T

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Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 16530 - 16587
Alignment:
Q  258 gagggagcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcacaaa 315  Q
    |||||||||||| |||||||||||||||  |||||||||| || ||||||||||||||    
T  16530 gagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaa 16587  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 53774904 - 53774842
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    |||||||||||||||| |||||||||||||||| ||||| | | |||| | ||||||||||||    
T  53774904 aattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaa 53774842  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 10464451 - 10464412
Alignment:
Q  18 atatcaatgtatcaccgctctcagaaagacacaatggcaa 57  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  10464451 atatcaatgtatcaccactctcagaaagatacaatggcaa 10464412  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 35767082 - 35767020
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcat-catcttccatataacaaa 159  Q
    ||||||||||| |||| |||||||||||||||| ||||| ||| | ||||||||||||||||||    
T  35767082 aattttaaggagttgaatccaagactcttcaactccaaa-ttcttccatcttccatataacaaa 35767020  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 837840 - 837778
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    ||||||||  |||||| |||||||||||| ||||||||| ||| |||| | ||||||||||||    
T  837840 aattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaa 837778  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 3565808 - 3565750
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 155  Q
    ||||||||| |||||| |||||||||||||||| ||||| | | |||||| ||||||||    
T  3565808 aattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataa 3565750  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 10467961 - 10467925
Alignment:
Q  252 aacctcgagggagcaacaattgtgtgtatgtctcagt 288  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  10467961 aacctcgaggtagcaacaattgagtgtatgtctcagt 10467925  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 4014974 - 4015032
Alignment:
Q  100 tttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaa 158  Q
    ||||||||||||| ||||||| |||||||| ||||| ||| |||||| |||||||||||    
T  4014974 tttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 4570991 - 4570929
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    ||||||||| |||||| ||||||| |||||||| ||||| ||| |||| | ||||||||||||    
T  4570991 aattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 4570929  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 39379068 - 39379125
Alignment:
Q  98 attttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 155  Q
    |||||||| |||||| |||||||||||||||| ||||| | | |||||| ||||||||    
T  39379068 attttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataa 39379125  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 28763912 - 28763973
Alignment:
Q  98 attttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 159  Q
    ||||| |||||| |||||||||||| |||||| ||||| | | |||||||||||||||||||    
T  28763912 attttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaa 28763973  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 3625798 - 3625740
Alignment:
Q  97 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 155  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||| |||| | ||||||||    
T  3625798 aattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

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