View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9135_low_17 (Length: 506)

Name: NF9135_low_17
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9135_low_17
NF9135_low_17
[»] chr4 (4 HSPs)
chr4 (24-396)||(31737190-31737559)
chr4 (201-304)||(13852294-13852397)
chr4 (462-493)||(31737093-31737124)
chr4 (136-178)||(55351269-55351311)
[»] chr6 (2 HSPs)
chr6 (180-388)||(8247039-8247247)
chr6 (241-277)||(14457238-14457274)
[»] chr7 (2 HSPs)
chr7 (173-319)||(12829238-12829388)
chr7 (101-178)||(44162403-44162480)
[»] chr1 (3 HSPs)
chr1 (177-324)||(40197872-40198019)
chr1 (125-178)||(40388157-40388210)
chr1 (240-356)||(40387947-40388063)
[»] chr5 (2 HSPs)
chr5 (174-340)||(29299614-29299780)
chr5 (137-174)||(10428279-10428316)
[»] scaffold0263 (1 HSPs)
scaffold0263 (136-178)||(8633-8675)
[»] chr8 (2 HSPs)
chr8 (180-322)||(4901708-4901850)
chr8 (173-355)||(25659795-25659977)
[»] chr2 (1 HSPs)
chr2 (104-178)||(33482996-33483070)
[»] chr3 (1 HSPs)
chr3 (125-178)||(49454579-49454632)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 24 - 396
Target Start/End: Complemental strand, 31737559 - 31737190
Alignment:
Q  24 cgtgggagaggcctaagttggatggagtgccgtttgagaggctttctttggaggaaaatgaggaattgattattaagcctttttcgttaatggagataga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  31737559 cgtgggagaggcctaagttggatggagtgccgtttgagaggctttctttggaggaaaatgaggaattgatta---agcctttttcgttaatggagataga 31737463  T
Q  124 agcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737462 agcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatga 31737363  T
Q  224 ggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31737362 ggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgattggt 31737263  T
Q  324 tgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737262 tgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta 31737190  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 13852294 - 13852397
Alignment:
Q  201 tttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggatt 300  Q
    ||||||||||| ||||||||||||||  |||||||    ||||| || |||||||||||||| ||||||||||| || || ||  |||  ||||||||||    
T  13852294 tttgatcaatttcatgctaatgaggtgctaccaaagtccatgttggcgtattttgttgctttaattccaaaagtgtcttcacctttggagttgaaggatt 13852393  T
Q  301 atcg 304  Q
    ||||    
T  13852394 atcg 13852397  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Complemental strand, 31737124 - 31737093
Alignment:
Q  462 tactgtatgggtgcgctactgctgtctgtgct 493  Q
    ||||||||||||||||||||||||||||||||    
T  31737124 tactgtatgggtgcgctactgctgtctgtgct 31737093  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 55351269 - 55351311
Alignment:
Q  136 agatagtgacggtaataaaagtccgggtccggatggttttaat 178  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  55351269 agatagtgatggtaataaaagcccgggtccggatggatttaat 55351311  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 180 - 388
Target Start/End: Complemental strand, 8247247 - 8247039
Alignment:
Q  180 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 279  Q
    ||||||||||||| |||||| || |||||||| |||||||||||| | ||| ||||||| ||||| |  ||||||||||| |||||  | ||||||||||    
T  8247247 aaggatgaggtgatgattttgttcgatcaatttcatgctaatgagattatatcaaaaggaatgttggtgtattttgttgcattgatatcgaaagtttcat 8247148  T
Q  280 ctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaa 379  Q
    |||| |||||| |||||||||| ||  |||| || ||||| ||| |||||||||||||||| ||||| ||| || ||||||||||||| ||  | |||||    
T  8247147 ctccaatggctatgaaggattaccgctctatttcattgctaggtagtttatacaaattactcgccaaagttttaacaaggcgtttggcgggaattatgaa 8247048  T
Q  380 ttcgattat 388  Q
    ||| |||||    
T  8247047 ttctattat 8247039  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 14457238 - 14457274
Alignment:
Q  241 tgttagcttattttgttgctttgattccaaaagtttc 277  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  14457238 tgttggcttattttgtggctttgattccaaaagtttc 14457274  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 319
Target Start/End: Complemental strand, 12829388 - 12829238
Alignment:
Q  173 tttaatcaaggatgaggtgaggattttat----ttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattcc 268  Q
    ||||||||||||||||||| ||||| |||    |||||||||| ||||  ||||||| ||| ||||||||  ||||||| ||||||||||||||||||||    
T  12829388 tttaatcaaggatgaggtgcggattatatatgtttgatcaatttcatgggaatgaggaaatcccaaaaggtttgttagcgtattttgttgctttgattcc 12829289  T
Q  269 aaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgct 319  Q
      ||||||||||||| | ||||||||||||||| |  ||||| ||||||||    
T  12829288 ggaagtttcatctcctagggctttgaaggattaccaccctatttctttgct 12829238  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 44162403 - 44162480
Alignment:
Q  101 cctttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 178  Q
    |||||||| ||| |||| ||||| |||||||| | |||||| || ||  ||||||| ||||| |||||||||||||||    
T  44162403 cctttttccttattggaaatagaggcggtggttaaagatagcgatggggataaaagcccgggaccggatggttttaat 44162480  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 177 - 324
Target Start/End: Complemental strand, 40198019 - 40197872
Alignment:
Q  177 atcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagttt 276  Q
    ||||| ||||||||||| ||| | ||||| ||||| |||| |||||||||| | || |  |||||||| |||||||||||||| || ||||| |||||||    
T  40198019 atcaaagatgaggtgagaattatgtttgaccaatttcatggtaatgaggtatttccgagggggatgttggcttattttgttgcgttaattcctaaagttt 40197920  T
Q  277 catctccgatggctttgaaggattatcgtcctatatctttgcttggtt 324  Q
      || || |||||||||| ||||| ||  || || |||||||||||||    
T  40197919 tgtcccctatggctttgagggattttcaaccgatttctttgcttggtt 40197872  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 40388210 - 40388157
Alignment:
Q  125 gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 178  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  40388210 gcggtggttagagatagtgatggtaataaaagtccgtgtccggatggttttaat 40388157  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 40388063 - 40387947
Alignment:
Q  240 atgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattac 339  Q
    ||||| |||| ||||||  |||||||||| ||||| |||||| |||||| ||||||||||| | | || ||||  ||||| || || ||||| |||||||    
T  40388063 atgttggctttttttgtgactttgattcccaaagtgtcatcttcgatggatttgaaggattttaggccaatattcttgctaggatgcttatataaattac 40387964  T
Q  340 ttgccaaggttctagca 356  Q
    | ||||||||| |||||    
T  40387963 tagccaaggttttagca 40387947  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 340
Target Start/End: Original strand, 29299614 - 29299780
Alignment:
Q  174 ttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaag 273  Q
    ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||  | |||| | |  | |||||||||||||| |||||||| ||||| |    
T  29299614 ttaatgaaggatgaggtgaggattatgtttgatcaattacatgctaatgaggtggtgccaagaagtttattagcttattttgtcgctttgatcccaaagg 29299713  T
Q  274 tttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattact 340  Q
    | || || ||||||   |||||||| | |||||| || ||| | |||||| || | ||||| |||||    
T  29299714 tgtcctcaccgatgatgttgaaggactttcgtccaatttctctacttggtagtatttacaagttact 29299780  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 10428279 - 10428316
Alignment:
Q  137 gatagtgacggtaataaaagtccgggtccggatggttt 174  Q
    |||||||||||  |||||||||||||||||||||||||    
T  10428279 gatagtgacggcgataaaagtccgggtccggatggttt 10428316  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 8675 - 8633
Alignment:
Q  136 agatagtgacggtaataaaagtccgggtccggatggttttaat 178  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  8675 agatagtgatggtaataaaagtccgggtccggatggttttaat 8633  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 322
Target Start/End: Original strand, 4901708 - 4901850
Alignment:
Q  180 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 279  Q
    |||||||| || || ||| | ||||||||||| || |||||||||||  |||| ||  | ||||||||||| ||||| ||||| ||||||||  |||| |    
T  4901708 aaggatgaagttagaattatgtttgatcaatttcacgctaatgaggttttaccgaagagtatgttagcttactttgtagctttaattccaaagatttctt 4901807  T
Q  280 ctccgatggctttgaaggattatcgtcctatatctttgcttgg 322  Q
    | ||  ||||||| ||||||| |||||| || |||||||||||    
T  4901808 cccctttggcttttaaggattttcgtcccatttctttgcttgg 4901850  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 355
Target Start/End: Original strand, 25659795 - 25659977
Alignment:
Q  173 tttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaa 272  Q
    |||||| || ||||| ||||| ||||| ||||| ||||| ||||||||||||||  | || | ||| ||||| |||||||||||  |||| ||| | |||    
T  25659795 tttaattaaagatgaagtgagaattttgtttgaccaatttcatgctaatgaggtgttgccgagaggtatgttggcttattttgtgactttaattactaaa 25659894  T
Q  273 gtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagc 355  Q
    || || || ||  |||  |||||||||||| | || || || |||||||| ||| | || ||| ||||||| ||||| |||||    
T  25659895 gtctcgtcccctttggagttgaaggattatagaccgatttccttgcttggatgtctctataaaatacttgcaaaggtcctagc 25659977  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 33482996 - 33483070
Alignment:
Q  104 ttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 178  Q
    ||||||||| ||||||| || ||||||||||  || ||||||||  ||||||||||||| ||||| |||||||||    
T  33482996 ttttcgttattggagattgaggcggtggtgaaggagagtgacggggataaaagtccgggaccggacggttttaat 33483070  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 49454579 - 49454632
Alignment:
Q  125 gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 178  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||| |||||||    
T  49454579 gcggtggtgagagatagtgatggtggtaaaagcccgggtccggatgcttttaat 49454632  T

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