View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_low_19 (Length: 490)
Name: NF9135_low_19
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 3492488 - 3492197
Alignment:
| Q |
22 |
caatcatattcttttgaccggtaatgattataagaccttaaaaagaacaacattaacgctgtttaataactatcgaagcatttcagagagaaagaaagag |
121 |
Q |
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| T |
3492488 |
caatcatattcttttgaccggtaatgattataagaccttaaaaagaaaaacattaacgctgtttaaaaactatcgaagcatttcagagagaaagaaagag |
3492389 |
T |
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| Q |
122 |
ggagatatggcagatatgggatctagaagggtatgtgacaatgtgtgtggctgcacaattccgtgtcctggtggttccacttgcaggtaaatttcttttg |
221 |
Q |
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| T |
3492388 |
ggagatatggcagatatgggatctagaatggtatgtgacaatgtgtgtggctgcacaattccgtgtgctggtggttccacttgcaggtaaatttcttttg |
3492289 |
T |
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| Q |
222 |
tttttcgtggtcttgttaagttaaatattatttaatatctttgtaatagccatttctacattttctattttcttaaatgaccaatgttatta |
313 |
Q |
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| T |
3492288 |
tttttcgtggtcttgttaagttaaatattatttaatatctttgtaatagccatttctacattttctattttcttaagtgaccaatgttatta |
3492197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 389 - 472
Target Start/End: Complemental strand, 3492204 - 3492121
Alignment:
| Q |
389 |
tgttattaattaattgttagattgattttacttctttgtaactccttattaatattcactttattctcaaaagtaaattggcca |
472 |
Q |
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| T |
3492204 |
tgttattaattaattgttagattgattttacttctttgtaactccttattaatattcactttattctcaaaagtaaattggcca |
3492121 |
T |
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