View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9135_low_2 (Length: 745)

Name: NF9135_low_2
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9135_low_2
NF9135_low_2
[»] chr2 (13 HSPs)
chr2 (14-327)||(27271511-27271822)
chr2 (46-245)||(12410689-12410887)
chr2 (46-245)||(12422749-12422947)
chr2 (46-245)||(6764322-6764520)
chr2 (46-245)||(37647867-37648065)
chr2 (324-459)||(27271907-27272040)
chr2 (130-245)||(2702258-2702373)
chr2 (49-116)||(11031683-11031750)
chr2 (165-245)||(11031818-11031898)
chr2 (158-238)||(34394492-34394572)
chr2 (18-116)||(3044206-3044302)
chr2 (473-509)||(27272004-27272040)
chr2 (168-238)||(29740101-29740171)
[»] chr4 (12 HSPs)
chr4 (46-245)||(43499199-43499397)
chr4 (17-242)||(7743447-7743669)
chr4 (46-244)||(36651742-36651939)
chr4 (47-245)||(9896508-9896703)
chr4 (47-245)||(39059723-39059918)
chr4 (49-242)||(42718475-42718669)
chr4 (165-242)||(37870649-37870726)
chr4 (48-116)||(37870786-37870854)
chr4 (18-116)||(48640600-48640696)
chr4 (46-116)||(47590593-47590663)
chr4 (18-116)||(40850680-40850776)
chr4 (184-245)||(48640775-48640836)
[»] chr1 (17 HSPs)
chr1 (46-245)||(4532087-4532285)
chr1 (46-245)||(51534478-51534676)
chr1 (137-245)||(33766349-33766456)
chr1 (28-238)||(33936313-33936526)
chr1 (46-116)||(34549253-34549323)
chr1 (165-245)||(19227887-19227967)
chr1 (165-245)||(34549383-34549463)
chr1 (165-245)||(45432374-45432454)
chr1 (46-140)||(52022661-52022755)
chr1 (18-116)||(20505511-20505607)
chr1 (18-116)||(26676765-26676861)
chr1 (46-116)||(19228027-19228097)
chr1 (46-116)||(33676634-33676704)
chr1 (45-142)||(31911660-31911757)
chr1 (126-245)||(13182626-13182744)
chr1 (46-132)||(28756600-28756686)
chr1 (46-142)||(27007499-27007595)
[»] chr7 (11 HSPs)
chr7 (67-245)||(9948853-9949030)
chr7 (45-245)||(1032125-1032320)
chr7 (46-245)||(9942602-9942800)
chr7 (137-245)||(28782015-28782122)
chr7 (163-245)||(11621382-11621464)
chr7 (165-243)||(12622906-12622984)
chr7 (46-116)||(40871442-40871512)
chr7 (45-145)||(17193991-17194091)
chr7 (165-245)||(40871302-40871382)
chr7 (46-116)||(12623044-12623114)
chr7 (46-116)||(40858158-40858228)
[»] chr8 (13 HSPs)
chr8 (17-245)||(24503929-24504154)
chr8 (46-245)||(45540217-45540413)
chr8 (17-245)||(8444263-8444485)
chr8 (82-245)||(45547846-45548000)
chr8 (18-116)||(4034429-4034525)
chr8 (46-116)||(13089915-13089985)
chr8 (18-116)||(9932234-9932330)
chr8 (18-116)||(25582719-25582815)
chr8 (158-245)||(10230104-10230191)
chr8 (165-245)||(13089766-13089850)
chr8 (49-121)||(13780977-13781049)
chr8 (158-245)||(24581449-24581536)
chr8 (172-245)||(25582581-25582654)
[»] scaffold0300 (1 HSPs)
scaffold0300 (46-245)||(9479-9677)
[»] chr5 (5 HSPs)
chr5 (46-245)||(22639461-22639659)
chr5 (46-245)||(19021292-19021489)
chr5 (46-245)||(6536979-6537176)
chr5 (121-245)||(39143220-39143343)
chr5 (18-116)||(26369073-26369169)
[»] chr6 (6 HSPs)
chr6 (46-244)||(24393806-24394009)
chr6 (165-244)||(165531-165610)
chr6 (46-116)||(12912388-12912458)
chr6 (165-245)||(12912248-12912328)
chr6 (46-238)||(18972621-18972818)
chr6 (46-143)||(6029222-6029319)
[»] scaffold0037 (2 HSPs)
scaffold0037 (46-116)||(867-937)
scaffold0037 (165-245)||(997-1077)
[»] scaffold0041 (2 HSPs)
scaffold0041 (46-116)||(94770-94840)
scaffold0041 (165-245)||(94900-94980)
[»] chr3 (3 HSPs)
chr3 (18-116)||(10436569-10436665)
chr3 (21-111)||(15029950-15030038)
chr3 (46-116)||(20406271-20406341)
[»] scaffold0074 (2 HSPs)
scaffold0074 (45-143)||(23689-23787)
scaffold0074 (190-245)||(23839-23894)
[»] scaffold0020 (1 HSPs)
scaffold0020 (47-116)||(124328-124397)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 27271511 - 27271822
Alignment:
Q  14 attatactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagc 113  Q
    ||||||||||||| |||||||||| |||| ||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  27271511 attatactggtggctgaaaacgaaccgtccta--gttttgttttctcctacctttcatggtggttgaaccctttaccttgcttgggaatacttatgtaac 27271608  T
Q  114 aggataaccttcttttttgttcctgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaag 213  Q
    | ||||  |||||||||| |||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||    
T  27271609 aagatagtcttcttttttattcctgttttggccattttgacacttttggaattgactctttcagctggagttttgacactccttgtgctgaaatctccag 27271708  T
Q  214 actttcagtaatttaatccattttagtttcttnnnnnnnntgtttgcgaaaaatcactcaaaaattcatagaagtacacatgagttgacgacttaacata 313  Q
     ||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27271709 gctttcagtaatttaatctattttagtttcttaaaaaaagtgtttgcgaaaaatcactcaaaaattcatagaagtacacatgagttgacgacttaacata 27271808  T
Q  314 gtaatataactaaa 327  Q
    ||||||||||||||    
T  27271809 gtaatataactaaa 27271822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 12410689 - 12410887
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || | || ||||||||||||||| |||||||||    
T  12410689 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacaaggtagccttcttttttgttcttgttttggc 12410788  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | |||||||||||||| |||||||||||| |||||| |||||  ||||||||||| ||||||||| || ||||||||| |||||||||||||||||||||    
T  12410789 c-ttttggcactcttgtaattgactcttttagctggggttttgtcactctttgtgatgaaatctccaggctttcagtattttaatccattttagtttctt 12410887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 12422749 - 12422947
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || | || ||||||||||||||| |||||||||    
T  12422749 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacaaggtagccttcttttttgttcttgttttggc 12422848  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | |||||||||||||| |||||||||||| |||||| |||||  ||||||||||| ||||||||| || ||||||||| |||||||||||||||||||||    
T  12422849 c-ttttggcactcttgtaattgactcttttagctggggttttgtcactctttgtgatgaaatctccaggctttcagtattttaatccattttagtttctt 12422947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 6764322 - 6764520
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| || |||| |||||||||| |||||||||    
T  6764322 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttatgaatatttatgtagcagggtagccttattttttgttcttgttttggc 6764421  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | |||||||||||||| |||||||||||| |||||| ||||| |||||| || ||||||||||||    ||||||||| |||||||||||||||||||||    
T  6764422 c-ttttggcactcttgtaattgactcttttagctggggttttgacactccttatgctgaaatctccgagctttcagtattttaatccattttagtttctt 6764520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 37647867 - 37648065
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| || | || ||||||||||||||| |||||||||    
T  37647867 tagttttgttttctcctaccattcatggtggttggaccctttaccttgcttaggaatatttatgtaacatggtagccttcttttttgttcatgttttggc 37647966  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | ||||| |||||||| |||||||||||| |||||  |||||  ||||| ||||||||||||||| | |||||||||| |||||||||||||| ||||||    
T  37647967 c-ttttgacactcttgtaattgactcttttagctgaggttttggcactccttgtgctgaaatctccaaactttcagtattttaatccattttaatttctt 37648065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 324 - 459
Target Start/End: Original strand, 27271907 - 27272040
Alignment:
Q  324 taaaattatatttaaccctaaaataatgttcttttagaaaaccctaaaataatgttgtattcattaaatttttaatcaccatatatgannnnnnnnnnna 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||           |    
T  27271907 taaaattatatttaaccctaaaataatgttcttttagaaaaccctaaaataatgttgtattcagtaaatttttaatcatcatatatga--ttttttttta 27272004  T
Q  424 gcttacatttttagtttgatggaaacacataatcta 459  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27272005 gcttacatttttagtttgatggatacacataatcta 27272040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 2702373 - 2702258
Alignment:
Q  130 ttgttcctgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaa 229  Q
    |||||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||  ||||| ||||||||||||||  || ||||||||| |||||    
T  2702373 ttgttcatattttggccgttttggcattcttgtaattgactctttcagctggggttttggcactccttgtgctgaaatcttgaggctttcagtattttaa 2702274  T
Q  230 tccattttagtttctt 245  Q
    ||||||||||||||||    
T  2702273 tccattttagtttctt 2702258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 11031683 - 11031750
Alignment:
Q  49 ttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||| ||||    
T  11031683 ttttgttttctcctaccattcatggtggttgaatcatttaccttgcttgggaatatttttgtaacagg 11031750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 11031818 - 11031898
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||||||||||| |||||  ||||| || |||||||||||| ||||||||| |||| | || |||||||| |||||    
T  11031818 ttgactctttcagctggggttttggcactccttatgctgaaatctccagactttcaataatatcattcattttagcttctt 11031898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 34394572 - 34394492
Alignment:
Q  158 cttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccatttta 238  Q
    |||| ||||||||||||||||||| |||||  ||||| ||||| ||||||||  || ||||||||||| |||| |||||||    
T  34394572 cttgtaattgactctttcagctggggttttggcactccttgtgttgaaatctttaggctttcagtaatataattcatttta 34394492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 3044206 - 3044302
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||||||||||| ||| |||||||| || ||||||||||||||| ||||  ||||||| ||||    
T  3044206 tactggtggctgaaagctaatcgtccta--gttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgagaattattatgtaacagg 3044302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 27272004 - 27272040
Alignment:
Q  473 agcttacattttttgtttgatggatacacataatcta 509  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27272004 agcttacatttttagtttgatggatacacataatcta 27272040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 29740101 - 29740171
Alignment:
Q  168 actctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccatttta 238  Q
    |||||||||| |||  ||| |||||||||||| |||||||||| ||||||||| |||| || | |||||||    
T  29740101 actctttcagttgggttttcaacactctttgtactgaaatctccagactttcaataatatatttcatttta 29740171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 43499199 - 43499397
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||| |||||||||    
T  43499199 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagccttcttttttgttcttgttttggc 43499298  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | |||||||||||||| |||||||||||| |||||| |||||  ||||| ||||||||||||||| |  ||||||||| |||||||||||||||||||||    
T  43499299 c-ttttggcactcttgtaattgactcttttagctggggttttggcactccttgtgctgaaatctccaagctttcagtattttaatccattttagtttctt 43499397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 7743447 - 7743669
Alignment:
Q  17 atactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||||||||||| |||| || | ||  |||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  7743447 atactggtggttgaaagcgaaccgaccta--gttttgttttctcctaccattcatggtggttgaaccctttaccttgtttaggaatatttatgtagcagg 7743544  T
Q  117 ataaccttcttttttgttcctgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagact 216  Q
     || ||||||||||||||| |||||||||| ||||| |||||||| |||||||||||| ||||  ||||||  ||||| ||||||||||||||| |  ||    
T  7743545 gtagccttcttttttgttcttgttttggcc-ttttgacactcttgtaattgactcttttagcttaagttttggcactccttgtgctgaaatctccatgct 7743643  T
Q  217 ttcagtaatttaatccattttagttt 242  Q
    ||||||  ||||||||||||||||||    
T  7743644 ttcagttttttaatccattttagttt 7743669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 46 - 244
Target Start/End: Complemental strand, 36651939 - 36651742
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||| |||||||||    
T  36651939 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacatggtaaccttctattttgttcatgttttggc 36651840  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttct 244  Q
    |  ||||||||||||| || ||||||||| |||||| |||||  ||||| ||||||||||||||| | ||||||  || ||||||||||||||||||||    
T  36651839 c-atttggcactcttgtaactgactcttttagctggggttttggcactccttgtgctgaaatctccaaactttcgatattttaatccattttagtttct 36651742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 9896703 - 9896508
Alignment:
Q  47 agttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggcc 146  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || |   |||||||||||||||||||||     
T  9896703 agttttgttttctcctaccattcatggtggttgaaccctttaccttgcttgggaatatttatgtaacagggtagc---cttttttgttcctgttttggca 9896607  T
Q  147 gttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||| ||||| |||||||| ||||| |||| |||||  ||||| ||||||| |||| || |  |||||| |||||| |||||||||||||||||    
T  9896606 gttttggcattcttgcaattgactttttcatctggggttttggcactccttgtgcttaaatttccaagctttcactaattttatccattttagtttctt 9896508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 39059918 - 39059723
Alignment:
Q  47 agttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggcc 146  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||||| || ||||||||||||| |||  || |   ||||||||||||||||||||||    
T  39059918 agttttgttttctcctaccattcatggtggttgaaccatttaccttgcctgcgaatatttatgtaacagagtagc---cttttttgttcctgttttggcc 39059822  T
Q  147 gttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |||||| || ||||| |||| |||||||||||| | |||||  ||||  |||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  39059821 gttttgacattcttgtaattaactctttcagcttgggttttggcactgcttgtgctgaattcttcagactttcagtaatttaatccattttagtttctt 39059723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 42718475 - 42718669
Alignment:
Q  49 ttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttc-ttttttgttcctgttttggccg 147  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | || || ||||| |||||||||| ||||||||||     
T  42718475 ttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacggggtagccttctttttttgttcttgttttggcc- 42718573  T
Q  148 ttttggcactcttgaaattgactctttcagctggagttttaacact-ctttgtgctgaaatctcaagactttcagtaatttaatccattttagttt 242  Q
    |||||||||||||  |||| ||||||| ||| || |||||| |||| ||| ||||||||||||| || ||||||||  ||||||||||||||||||    
T  42718574 ttttggcactcttataattaactcttttagccggggttttagcactccttggtgctgaaatctccaggctttcagttttttaatccattttagttt 42718669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 37870726 - 37870649
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagttt 242  Q
    ||||||||||||||||| |||||  ||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  37870726 ttgactctttcagctggggttttggcactccttgtgctgaaatctccagactttgagtaatataatccattttagttt 37870649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 37870854 - 37870786
Alignment:
Q  48 gttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||| ||||    
T  37870854 gttttgttttctcctaccattcatggtggttgaatcctttaccttgcttgagaatatttttgtaacagg 37870786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 48640600 - 48640696
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||||||  |||||| ||||||||||| ||| |||||||| || | |||||||||||||| ||| |||||||| ||||    
T  48640600 tactggtggctgaaagcaaatcgtcata--gttttgttttctcctaccattcttggtggttaaatcttttaccttgcttggaaatttttatgtaacagg 48640696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 47590663 - 47590593
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||| |||||||| || | |||||||||||||||||| |||||||| ||||    
T  47590663 tagttttgttttctcctaccattcttggtggttaaatcatttaccttgcttgggaatttttatgtaacagg 47590593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 40850680 - 40850776
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||| ||||||| ||| |||||||| || ||||||||||||||||||||  ||||||| ||||    
T  40850680 tactggtggctgaaagctaatcgtccta--gttttgttttttcctaccattcttggtggttaaatcctttaccttgcttgggaattattatgtaacagg 40850776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 48640775 - 48640836
Alignment:
Q  184 ttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||| ||||| ||||||||||||||  || | ||||||||| || ||||||||||||||||    
T  48640775 ttttagcactccttgtgctgaaatcttcaggcgttcagtaatatattccattttagtttctt 48640836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 8e-54; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 4532285 - 4532087
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| || | || |||||| |||||||| |||||||||    
T  4532285 tagttttgttttctcctaccattcatggtggttgaacccttcaccttgcttaggaatatttatgtaacaaggtatccttctattttgttcatgttttggc 4532186  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |  ||||| ||||||| |||||||||||| | |||| |||||  ||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  4532185 c-atttggtactcttgtaattgactcttttacctggggttttggcactccttgtgctgaaatctccagactttcagtattttaatccattttagtttctt 4532087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 51534676 - 51534478
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||  ||| || | |||| |||||||| |||||||||    
T  51534676 tagttttggtttctcctaccattcatggtgattgaaccctttaccttgcttaggaatatttatgtaatagggtagcattctattttgttcatgttttggc 51534577  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | |||||||||||||| |||||||||||| ||| || |||||  ||||| ||||||||||||||| || ||||| ||| |||||||||||||||||||||    
T  51534576 c-ttttggcactcttgtaattgactcttttagcaggggttttggcactccttgtgctgaaatctccaggctttcggtattttaatccattttagtttctt 51534478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 33766349 - 33766456
Alignment:
Q  137 tgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattt 236  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||| |||||  ||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  33766349 tgttttggcc-ttttgacactcttgtaattgactcttttaactggggttttggcactccttgtgctgaaatctccagactttcagtattttaatccattt 33766447  T
Q  237 tagtttctt 245  Q
    |||||||||    
T  33766448 tagtttctt 33766456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 33936313 - 33936526
Alignment:
Q  28 tgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttctt 127  Q
    ||||| ||||||||||||  |||||| |||||| |||| ||| ||||||| ||| ||||||||||| |||||||||||  ||||  ||| || | |||||    
T  33936313 tgaaagcgaatcgtcata--gttttgttttctcttaccattcgtggtggtcgaatcctttaccttgattgggaatattgttgtaatagggtagctttctt 33936410  T
Q  128 ttttgttcctgttttgg----ccgttttggcact-cttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagt 222  Q
    ||||| |||||||||||    ||||||||    | |||  |||||||||||||||||||  ||||  ||||| |||| |||||||||| |||||||||||    
T  33936411 ttttgatcctgttttggttccccgttttgtatttacttataattgactctttcagctgggattttggcactccttgtcctgaaatctccagactttcagt 33936510  T
Q  223 aatttaatccatttta 238  Q
    ||| ||||||||||||    
T  33936511 aatataatccatttta 33936526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 34549253 - 34549323
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  34549253 tagttttgttttctcctaccattcatggtggttgaatcctttaccttgcttgggaatatttttgtaacagg 34549323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 19227967 - 19227887
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||||||||||| |||||  ||||| ||||||||||||||| || ||||||||||| ||||||||||||| |||||    
T  19227967 ttgactctttcagctggggttttggcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttctt 19227887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 34549383 - 34549463
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||||||||||| |||||  ||||| ||||||||||||||| ||||||| |||||| ||||||||||||| |||||    
T  34549383 ttgactctttcagctggggttttggcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttctt 34549463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 45432454 - 45432374
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||||||||||| |||||  ||||| ||||||||||||||| ||||||| |||||| ||||||||||||| |||||    
T  45432454 ttgactctttcagctggggttttggcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttctt 45432374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 52022661 - 52022755
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgtt 140  Q
    |||||||| ||||||||| | ||||||||||||||| |||||||||| |||| | || | |||||| |||| |||| |||||||||| |||||||    
T  52022661 tagttttgttttctcctatcattcatggtggttgaatcctttaccttacttgaggatttatatgtaacagggtaactttcttttttggtcctgtt 52022755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 20505511 - 20505607
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||||||||||| ||| |||||||| || ||||||||||||||||||||  ||||||| ||||    
T  20505511 tactggtggctgaaagctaatcgtccta--gttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgggaattgttatgtaacagg 20505607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 26676765 - 26676861
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||||||||||| ||| |||||||| || ||||||||||||||||||||  ||||||| ||||    
T  26676765 tactggtggctgaaagctaatcgtccta--gttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgggaattattatgtaacagg 26676861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 19228097 - 19228027
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||  |||| ||||||| |||| ||||    
T  19228097 tagttttgttttctcctaccattcatggtggttgaatcctttaccttatttggaaatatttttgtaacagg 19228027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 33676704 - 33676634
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||| |||||||| || ||||||||||| |||||||| |||||||| ||||    
T  33676704 tagttttgttttctcctaccattcttggtggttaaatcctttaccttgtttgggaatttttatgtaacagg 33676634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 31911757 - 31911660
Alignment:
Q  45 atagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgtttt 142  Q
    ||||||||| ||||||||||| ||| ||||||||||  | |||||||||||||||||| | ||||||  ||| || | |||||||||  |||||||||    
T  31911757 atagttttgttttctcctaccattcgtggtggttgagtcatttaccttgcttgggaatttatatgtaatagggtagctttctttttttatcctgtttt 31911660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 13182626 - 13182744
Alignment:
Q  126 ttttttgttcctgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaat 225  Q
    |||||| ||| |||||||||| |||||| | ||||| |||||||||||| || ||| |||||  ||||| || | ||||||| || || ||||||||| |    
T  13182626 ttttttcttcttgttttggcc-ttttggaattcttgtaattgactcttttagttggggttttggcactccttatactgaaatttccaggctttcagtatt 13182724  T
Q  226 ttaatccattttagtttctt 245  Q
    |||||| |||||| ||||||    
T  13182725 ttaatctattttaatttctt 13182744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 28756686 - 28756600
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttg 132  Q
    |||||||| ||||||||||| ||| |||||||| || ||||||||||| ||||||||  ||||||| |||  || | ||||||||||    
T  28756686 tagttttgttttctcctaccattcttggtggttaaatcctttaccttgtttgggaattattatgtaacagagtagctttcttttttg 28756600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 27007595 - 27007499
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgtttt 142  Q
    |||||||| ||||||||||| ||| ||||||||||| ||||||| || ||||| ||| | | |||| |||| || | ||||||||||  ||||||||    
T  27007595 tagttttgttttctcctaccattcgtggtggttgaatcctttacattacttggaaatttatttgtaacagggtagctttcttttttgaccctgtttt 27007499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 7e-51; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 9948853 - 9949030
Alignment:
Q  67 ttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggccgttttggcactcttgaaatt 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||| |||||||| |||||||||| |||||||||||||| ||||    
T  9948853 ttcatggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-ttttggcactcttgtaatt 9948951  T
Q  167 gactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |||||||| |||||| |||||   |||| ||||||||||||||  || ||||||||| |||||||||||||||||||||    
T  9948952 gactcttttagctggggttttggtactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 9949030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 45 - 245
Target Start/End: Original strand, 1032125 - 1032320
Alignment:
Q  45 atagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttgg 144  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||||||||||| |||||||||||||| |||| ||      |||||||||| ||||||||    
T  1032125 atagttttgttttctcctactattcatggtggttgaaccatttaccttgcttaggaatatttatgtaacagggtag-----ttttttgttcatgttttgg 1032219  T
Q  145 ccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttct 244  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| || ||  |||||||||||||| || |||||||||||||| |||| ||||||||||    
T  1032220 ccgttttggcattcttgtaattgactctttcagctggggttttagcattccctgtgctgaaatctccaggctttcagtaatttagtccaatttagtttct 1032319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 9942800 - 9942602
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||| |||||||| |||  ||| ||| |||||||||||||| |||  || ||||||||||||||| |||||||||    
T  9942800 tagttttgttttctcctaccattcatggtagttgaaccatttgtcttacttaggaatatttatgtaacagagtagccttcttttttgttcttgttttggc 9942701  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | |||||||||||||| |||||||| ||| || ||  ||||| |||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  9942700 c-ttttggcactcttgtaattgactattttagttgaggttttgacactccttgtgctgaaatctccagactttcagtattttaatccattttagtttctt 9942602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 28782122 - 28782015
Alignment:
Q  137 tgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattt 236  Q
    |||||||||| |||||||||||||| |||||||||||| |||||| |||||  ||||| ||||||||||||||| || ||||||||| ||||||||||||    
T  28782122 tgttttggcc-ttttggcactcttgtaattgactcttttagctggggttttggcactccttgtgctgaaatctccaggctttcagtattttaatccattt 28782024  T
Q  237 tagtttctt 245  Q
    |||||||||    
T  28782023 tagtttctt 28782015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 11621382 - 11621464
Alignment:
Q  163 aattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||||||||||||| |||||  ||||| ||||||||||||||| || ||||||||||| ||||||||||||| |||||    
T  11621382 aattgactctttcagctggggttttggcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttctt 11621464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 12622984 - 12622906
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttc 243  Q
    |||||||| |||  ||||||||| ||||||||| |||| ||||||| || ||||||||||| |||||||||||||||||    
T  12622984 ttgactctatcaattggagttttgacactctttatgctaaaatctccaggctttcagtaatataatccattttagtttc 12622906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 40871512 - 40871442
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||||||| |||| ||||    
T  40871512 tagttttgttttctcctaccattcatggtggttgaatcatttaccttgcttgagaatatttttgtaacagg 40871442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 17194091 - 17193991
Alignment:
Q  45 atagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttgg 144  Q
    ||||||||| | ||||||||| ||| ||||||||||| ||||||||||| |||||||||||| ||||  ||| || | ||||||||||  | ||||||||    
T  17194091 atagttttgttctctcctaccattcgtggtggttgaatcctttaccttgtttgggaatatttttgtaatagggtagctttcttttttgagcttgttttgg 17193992  T
Q  145 c 145  Q
    |    
T  17193991 c 17193991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 40871382 - 40871302
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |||||||||||||||||  ||||  ||||| ||||||||||||||| || |||| | |||| ||||||||||||| |||||    
T  40871382 ttgactctttcagctgggattttggcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttctt 40871302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 12623114 - 12623044
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||| ||||| |||||| |||||||| | ||||||||||||| |||||||| |||| ||||    
T  12623114 tagttttgttttcttctaccattcatgatggttgaatcatttaccttgcttgagaatatttttgtaacagg 12623044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 40858228 - 40858158
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| |||||||| || ||| | |||||| || ||| |||||||||||||||| |||||||| ||||    
T  40858228 tagttttgttttctccttccattcttagtggttaaatcctctaccttgcttgggaatttttatgtaacagg 40858158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 3e-50; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 24503929 - 24504154
Alignment:
Q  17 atactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||||||||||| |||| || | ||  |||||| ||||||||||| |||||||||| |||||||||||||||| || |||||||||||||| ||||    
T  24503929 atactggtggttgaaagcgaaccgaccta--gttttgttttctcctaccattcatggtggctgaaccctttaccttgtttaggaatatttatgtaacagg 24504026  T
Q  117 ataaccttcttttttgttcctgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagact 216  Q
     || ||||||||||||||| |||||||||| ||||||||| |||| |||||||||||| |||||  |||||  || || ||||||||||||||| |  ||    
T  24504027 gtagccttcttttttgttcttgttttggcc-ttttggcacacttgtaattgactcttttagctgaggttttggcattccttgtgctgaaatctctatgct 24504125  T
Q  217 ttcagtaatttaatccattttagtttctt 245  Q
    ||||||  |||||||||||||||||||||    
T  24504126 ttcagttttttaatccattttagtttctt 24504154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 45540217 - 45540413
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  || || | || | ||||||||||||||| |||||||    
T  45540217 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttgggaatatttacataacatggtagctttcttttttgttcctattttggc 45540316  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |||||| ||| ||||| |||||||||||| || ||| |||||  || || ||||||||||||||   | |||||||||||||||||| ||||||||||||    
T  45540317 cgttttagcattcttgcaattgactcttttagttggggttttggcattccttgtgctgaaatct---ggctttcagtaatttaatccgttttagtttctt 45540413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 8444485 - 8444263
Alignment:
Q  17 atactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||||| ||||| ||||||| | ||  |||||| |||||| |||| |||||||| ||||||| ||||||||||||| |||||||||||||| ||||    
T  8444485 atactggtggctgaaagcgaatcgaccta--gttttgttttctcttaccattcatggttgttgaactctttaccttgcttaggaatatttatgtaacagg 8444388  T
Q  117 ataaccttcttttttgttcctgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagact 216  Q
    ||| |||||| |||||||| ||||||  ||  ||||||||||||| |||||||||||| | |||| |||||  ||||||||||||||||||||| || ||    
T  8444387 atagccttctattttgttcatgttttaacc-atttggcactcttgtaattgactcttttaactggggttttggcactctttgtgctgaaatctctaggct 8444289  T
Q  217 ttcagtaatttaatccattttagtttctt 245  Q
       | || |||||||||||||||||||||    
T  8444288 ---attattttaatccattttagtttctt 8444263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 45547846 - 45548000
Alignment:
Q  82 ccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggccgttttggcactcttgaaattgactctttcagctgg 181  Q
    |||||||||||||||||||||||||| ||| |||| || | |||||||||||||||||||||||         | ||||| |||||||||||||||||||    
T  45547846 ccctttaccttgcttgggaatatttacgtaacagggtagctttcttttttgttcctgttttggc---------attcttgtaattgactctttcagctgg 45547936  T
Q  182 agttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
     |||||  ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||    
T  45547937 ggttttggcactccttgtgctgaaatctccaggctttcagtaatttaatccattttagtttctt 45548000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 4034525 - 4034429
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||| ||||    
T  4034525 tactggtggctgaaagcaaatcgtccta--gttttgttttctcctaccattcatggtggttgaatcatttaccttgcttgggaatatttctgtaacagg 4034429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 13089985 - 13089915
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||| |||| ||||    
T  13089985 tagttttgttttctcctaccatttatggtggttgaatcctttaccttgcttgggaatatttttgtaacagg 13089915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 9932330 - 9932234
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||||||||||| ||| |||||||| || ||||||||||||||||||||  ||||||| ||||    
T  9932330 tactggtggctgaaagctaatcgtccta--gttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgggaattattatgtaacagg 9932234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 25582815 - 25582719
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||||||||||| ||| |||||||| || ||||||||||||||||||||  ||||||| ||||    
T  25582815 tactggtggctgaaagctaatcgtccta--gttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgggaattattatgtaacagg 25582719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 10230191 - 10230104
Alignment:
Q  158 cttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |||| |||||||||||| || || || ||| |||||  || |||||||||||| ||||||||| | |||||||| |||||||||||||    
T  10230191 cttgtaattgactcttttagttgaagctttgacacttcttatgctgaaatctccagactttcattgatttaatcaattttagtttctt 10230104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 13089850 - 13089766
Alignment:
Q  165 ttgactctttcagctggagttttaacac----tctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||||||||||| |||||  |||    || ||||||||||||||| ||||||| |||||| ||||||||||||| |||||    
T  13089850 ttgactctttcagctggggttttggcactccttccttgtgctgaaatctccagacttttagtaatataatccattttagcttctt 13089766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 13781049 - 13780977
Alignment:
Q  49 ttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataac 121  Q
    ||||| ||||||||||| ||| |||||||| || |||||||||| |||||||||  ||||||| |||| ||||    
T  13781049 ttttgttttctcctaccattcttggtggttaaatcctttaccttacttgggaattattatgtaacagggtaac 13780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 24581536 - 24581449
Alignment:
Q  158 cttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |||| |||||| |||||||||||| ||||| |||||| || | ||||||| |  ||||||||| |||| |||| |||||||| |||||    
T  24581536 cttgtaattgattctttcagctggggttttgacactccttatactgaaatattcagactttcaataatataattcattttagcttctt 24581449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 25582654 - 25582581
Alignment:
Q  172 tttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||||| ||||| ||||  |||||||||||| |  || | ||||||||| || ||||||||||||||||    
T  25582654 tttcagctggatttttagcacttcttgtgctgaaatattcaggcgttcagtaatatattccattttagtttctt 25582581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 9479 - 9677
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| ||  ||||| |||||||| |||||||||    
T  9479 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagtcttctattttgttcatgttttggc 9578  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |  ||||||||||||| || ||||||||| ||||||  |||| |||||  ||||||||||||||  || |||| |||| |||||||||||||||||||||    
T  9579 c-atttggcactcttgtaactgactcttttagctgggattttgacacttcttgtgctgaaatcttcaggcttttagtattttaatccattttagtttctt 9677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 22639461 - 22639659
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| |||| || |||||| |||||||| ||||||||     
T  22639461 tagttttgttttctcctaccattcatggtggttgaaccatttaccttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttgg- 22639559  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |  ||||||||||||| || ||||||||| | |||| |||||  ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  22639560 ctatttggcactcttgtaactgactcttttaactggggttttggcactccttgtgatgaaatctccaaactttcagtattttaatccattttagtttctt 22639659  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 19021292 - 19021489
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||| ||||| | || || |||| |||||||||| |||||||||    
T  19021292 tagttttgttttctcctgccattcatggtggttgaaccctttaccttgcttaggaatatt-atgtaactgggtagcctttttttttgttcatgttttggc 19021390  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | ||| |||||||||| |||||||||||| |||||| |||||  ||||| || | |||||||||| |  |||||| ||||||||||||||||||||||||    
T  19021391 c-tttcggcactcttgtaattgactcttttagctggggttttggcactccttatactgaaatctccaagctttcaataatttaatccattttagtttctt 19021489  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 6536979 - 6537176
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttggc 145  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||| || || | || |||| ||||||||| ||||||||||    
T  6536979 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttgataatatttatataacatggtagcctt-ttttttgtttctgttttggc 6537077  T
Q  146 cgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    | ||||| || | ||| |||||||||||| ||||    ||||  ||||| || |||||||||||| ||| |||||||||||| |||||||||||||||||    
T  6537078 ctttttgacatttttgtaattgactcttt-agcttagattttggcactccttatgctgaaatctccagagtttcagtaatttcatccattttagtttctt 6537176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 39143343 - 39143220
Alignment:
Q  121 ccttcttttttgttcctgttttggccgttttggcactcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttca 220  Q
    |||||| |||||||| |||||||||| |||||||||||||| |||||||||||| ||||    ||||  ||||| || |||||||||||| || |||||     
T  39143343 ccttctattttgttcatgttttggcc-ttttggcactcttgtaattgactcttttagctatgattttggcactccttatgctgaaatctccaggctttcg 39143245  T
Q  221 gtaatttaatccattttagtttctt 245  Q
    ||| |||||||||||||||||||||    
T  39143244 gtattttaatccattttagtttctt 39143220  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 26369169 - 26369073
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||||||||||  ||| |||||||| || | ||||||||||||||||||  ||||||| ||||    
T  26369169 tactggtggctgaaagctaatcgtccta--gttttgttttctcctactattcttggtggttaaatcttttaccttgcttgggaattattatgtaacagg 26369073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 46 - 244
Target Start/End: Original strand, 24393806 - 24394009
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttg-- 143  Q
    |||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||| || |||| ||   || | |||||||||  ||||||||||      
T  24393806 tagttttgttttctcctaccattcgtggtggttgaatcctttaccttgcttgggaatacttttgtaacacagtagctttctttttttatcctgttttgat 24393905  T
Q  144 --gccgttttggca-ctcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagt 240  Q
       |||||||   |  ||||| |||||||||||||||||   |||||  ||||| |||||||||||||||||| |||| |||||| ||||| |||||||     
T  24393906 tccccgttttcttatttcttgtaattgactctttcagctaaggttttggcactccttgtgctgaaatctcaaggcttttagtaatataatcaattttagc 24394005  T
Q  241 ttct 244  Q
    ||||    
T  24394006 ttct 24394009  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 165531 - 165610
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttct 244  Q
    ||||||||||||||||| ||||| |||||  ||||||||||||||||||||||| | |||| ||||||||||||||||||    
T  165531 ttgactctttcagctggggttttgacacttcttgtgctgaaatctcaagacttttaataatataatccattttagtttct 165610  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 12912458 - 12912388
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  12912458 tagttttgttttctcctaccattcatggtggttgaatcctttaccttgcttgggaatatttttgtaacagg 12912388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 12912328 - 12912248
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |||||||||||| |||| ||||| |||||| ||||||||||||||| ||||||| |||||| ||||||||||||| |||||    
T  12912328 ttgactctttcatctggggttttgacactccttgtgctgaaatctccagacttttagtaatataatccattttagcttctt 12912248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 18972818 - 18972621
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttg-- 143  Q
    |||||||| ||||||||||| ||||||||||||||| | | ||||||||||||||||| || |||| || | || | |||||||||| ||||||||||      
T  18972818 tagttttgttttctcctaccattcatggtggttgaatcatataccttgcttgggaatacttttgtaacacggtagctttcttttttgatcctgttttgat 18972719  T
Q  144 --gccgttttggca-ctcttgaaattgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccatttta 238  Q
       | |||||   |  ||||| ||||| |||||||||||   |||||  ||||| |||||||||||||||||| |||| |||||| ||||| ||||||    
T  18972718 tctctgttttcttatttcttgtaattgtctctttcagctaaggttttggcactccttgtgctgaaatctcaaggcttttagtaatataatcaatttta 18972621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 6029222 - 6029319
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttg 143  Q
    |||||||| ||||||||||| | |||||||||| || | ||||||||||||||||||  ||||| | |||| || | ||||||| || | ||||||||    
T  6029222 tagttttgttttctcctaccatacatggtggttaaatcatttaccttgcttgggaattattatgcaacagggtagctttcttttatggttctgttttg 6029319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 867 - 937
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||| ||||    
T  867 tagttttgttttctcctaccattcatggtggttgaatccttaaccttgcttgggaatatttttgtaacagg 937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 997 - 1077
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||||||||||||||| |||||  ||||| || |||||||||||| |||||||  ||||| ||||||||||||| |||||    
T  997 ttgactctttcagctggggttttgtcactccttatgctgaaatctccagactttttgtaatataatccattttagcttctt 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 94770 - 94840
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||||||| |||| ||||    
T  94770 tagttttgttttctcctaccattcatggtggttgaatcatttaccttgcttgagaatatttttgtaacagg 94840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 94900 - 94980
Alignment:
Q  165 ttgactctttcagctggagttttaacactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    |||||||||||||||||  ||||  ||||| ||||||||||||||| || |||| | |||| ||||||||||||| |||||    
T  94900 ttgactctttcagctgggattttggcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttctt 94980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 10436665 - 10436569
Alignment:
Q  18 tactggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||||| ||||| | ||||||| ||  |||||| ||||||||||| ||| |||||||| || ||||||||||||||||||||  ||||||| ||||    
T  10436665 tactggtggctgaaagctaatcgtccta--gttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgggaattattatgtaacagg 10436569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 15029950 - 15030038
Alignment:
Q  21 tggtggttgaaaacgaatcgtcatatagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgta 111  Q
    |||||||||||| |||||| |||||  |||||| ||||||||||| | |||||||||| || | |||||||||||||| |||  |||||||    
T  15029950 tggtggttgaaagcgaatcatcata--gttttggtttctcctaccatacatggtggttaaatcttttaccttgcttggaaattattatgta 15030038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 20406271 - 20406341
Alignment:
Q  46 tagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    |||||||| ||||||||||| ||| |||||||| || | ||||||||||||||||||  ||||||| ||||    
T  20406271 tagttttgttttctcctaccattcttggtggttaaatcttttaccttgcttgggaattattatgtaacagg 20406341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 23689 - 23787
Alignment:
Q  45 atagttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcaggataaccttcttttttgttcctgttttg 143  Q
    ||||||||| ||||||||||| ||| ||||||||||| | |||||||||||||| |||| || |||| || | || | |||||||||  ||||||||||    
T  23689 atagttttgttttctcctaccattcgtggtggttgaatcatttaccttgcttggaaatacttttgtaacacggtagctttcttttttcatcctgttttg 23787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 23839 - 23894
Alignment:
Q  190 cactctttgtgctgaaatctcaagactttcagtaatttaatccattttagtttctt 245  Q
    ||||| |||||||||||||||||| |||| |||||| ||||| ||||||| |||||    
T  23839 cactccttgtgctgaaatctcaaggcttttagtaatataatcaattttagcttctt 23894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 124397 - 124328
Alignment:
Q  47 agttttgatttctcctacctttcatggtggttgaaccctttaccttgcttgggaatatttatgtagcagg 116  Q
    ||||||| ||||||||||| ||| |||||||| || ||||||||||||||||||||  ||||||| ||||    
T  124397 agttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgggaattattatgtaacagg 124328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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