View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9135_low_20 (Length: 464)
Name: NF9135_low_20
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 234 - 417
Target Start/End: Original strand, 50011892 - 50012075
Alignment:
| Q |
234 |
aaaccagaggtagatttatttattttagttacaaccatgttcatagttttaaaaccaggtgccttttcacatgggaaaggtgaaaatcttcccatgatgg |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50011892 |
aaaccagaggtagatttatttattttagttacaaccatattcatagttttaaaaccaggtgccttttcatatgggaaaggtgaaaatcttcccatgatgg |
50011991 |
T |
|
| Q |
334 |
accacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctcccacaccataacatctcttttccattc |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
50011992 |
accacatgtgattataagttagatcttgaggttgaattaaattttattatatgtctcccacaccatagcatcttttttccattc |
50012075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 50011737 - 50011892
Alignment:
| Q |
23 |
agcttgcttattttacctgctgttttgattcatggagctagctacctagctttatttatagtattacttattctcagctttggccattgtgttagctctt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50011737 |
agcttgcttattttacctgctgttttgattcatgaagctagctacctagctttatttatagtattacttattctcagctttggccattgtgttagctctc |
50011836 |
T |
|
| Q |
123 |
gcggttagatggaaggagtatgagtgttgtatataaacttaccatattgatctcaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50011837 |
gcggttagatggaaggagtatgagtgttgtatataaacttaccatattgatctcaa |
50011892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 291 - 417
Target Start/End: Complemental strand, 21444515 - 21444389
Alignment:
| Q |
291 |
ggtgccttttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21444515 |
ggtgccttttcacatgggaaaggtgaaaatcttcccatgataaaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctc |
21444416 |
T |
|
| Q |
391 |
ccacaccataacatctcttttccattc |
417 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
21444415 |
ccacaccatagcatctcttttccattc |
21444389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 42067137 - 42067027
Alignment:
| Q |
290 |
aggtgccttttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtct |
389 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
42067137 |
aggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagattttgaggttgtattaaattttatcatatgtct |
42067038 |
T |
|
| Q |
390 |
cccacaccata |
400 |
Q |
| |
|
||||||||||| |
|
|
| T |
42067037 |
cccacaccata |
42067027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 21443508 - 21443610
Alignment:
| Q |
298 |
tttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctcccacacc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21443508 |
tttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagattttgaggttgtattaaattttatcatatgtctcccacacc |
21443607 |
T |
|
| Q |
398 |
ata |
400 |
Q |
| |
|
||| |
|
|
| T |
21443608 |
ata |
21443610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 311 - 417
Target Start/End: Original strand, 42066144 - 42066250
Alignment:
| Q |
311 |
aggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctcccacaccataacatctcttt |
410 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42066144 |
aggtgaaaatcttctcatgatagaccacatgtgattatagattagatcttgaggttgtattaaattttattatatgtctcccacaccatagcatctcttt |
42066243 |
T |
|
| Q |
411 |
tccattc |
417 |
Q |
| |
|
||||||| |
|
|
| T |
42066244 |
tccattc |
42066250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 50012958 - 50012848
Alignment:
| Q |
290 |
aggtgccttttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtct |
389 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
50012958 |
aggtgccatttcacatgggaaaggtgaaaatcttcccatgatagaccacatgtgattataggttagattttgaggttgaattaaattttatcatatgtct |
50012859 |
T |
|
| Q |
390 |
cccacaccata |
400 |
Q |
| |
|
||||||||||| |
|
|
| T |
50012858 |
cccacaccata |
50012848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 9124445 - 9124408
Alignment:
| Q |
290 |
aggtgccttttcacatgggaaaggtgaaaatcttccca |
327 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
9124445 |
aggtgccatttcacatgggaaaggtgaaaaccttccca |
9124408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 5929190 - 5929227
Alignment:
| Q |
290 |
aggtgccttttcacatgggaaaggtgaaaatcttccca |
327 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
5929190 |
aggtgccatttcacatgggaaaggtgaaaaccttccca |
5929227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 42843884 - 42843921
Alignment:
| Q |
290 |
aggtgccttttcacatgggaaaggtgaaaatcttccca |
327 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
42843884 |
aggtgccatttcacatgggaaaggtgaaaaccttccca |
42843921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University