View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_low_24 (Length: 424)
Name: NF9135_low_24
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 32001359 - 32001752
Alignment:
| Q |
8 |
ggtagataatactccaacatttataacaagtatattacaatttagggttttgaagtctataaattagggtttgatatgaaatcaaatgtagatgcagtta |
107 |
Q |
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| T |
32001359 |
ggtatataatactccaacatttataacaagtatattacaatttagggttttgaagtctataaattagggtttgatatgaaatcaaatgtagatgcagtta |
32001458 |
T |
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| Q |
108 |
gagaagtttatgtaaatagagtaatattttatggtttaaaatgaggtgtactgtgtcttgatgagatttatgatttttcacttgttgcagaaaattcaac |
207 |
Q |
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| T |
32001459 |
gagaagtttatgtaaatccagtaatattttatggcttaaaatgaggtgtactgtgtcttgatgagatttatgatttttcacttgttgcagaaaattcaac |
32001558 |
T |
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| Q |
208 |
cagtaaacactcaactatacaaagtatataattattnnnnnnnnnnnnnnnnctatacaaagtatatagatatattttccacaaactggtttgttaaata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32001559 |
cagtaaacactcaactatacaaagtatataattattaaaaaattcaaaaaaactatacaaagtatatggatatattttccacaaactggtttgttaaata |
32001658 |
T |
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| Q |
308 |
attgcatnnnnnnnttgttcaattatgtcctttctatttagataatgacaatgttaattattcaagaaatgattcctttcttttacatctcaac |
401 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32001659 |
attgcataaaaaaattgttcaattatgtcctttctatttagataatgacaatgttaattattcaagaaatgattcgtttcttttacatctcaac |
32001752 |
T |
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