View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9135_low_28 (Length: 330)

Name: NF9135_low_28
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9135_low_28
NF9135_low_28
[»] chr7 (3 HSPs)
chr7 (167-318)||(3229958-3230109)
chr7 (18-110)||(3229810-3229902)
chr7 (18-73)||(3181570-3181625)
[»] chr1 (2 HSPs)
chr1 (210-264)||(47827346-47827400)
chr1 (210-264)||(47832040-47832094)
[»] chr8 (1 HSPs)
chr8 (210-260)||(4330066-4330116)
[»] chr6 (1 HSPs)
chr6 (210-255)||(33123777-33123822)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 3229958 - 3230109
Alignment:
Q  167 aatatgtttggttattgaatttttaaataannnnnnngcaatttggaccgccgatattatattaaaggcttgccagccctcaataaaggcttgccgacag 266  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3229958 aatatgtttggttattgaatttttaaataattttttttcaatttggaccgccgatattatattaaaggcttgcgagccctcaataaaggcttgccgacag 3230057  T
Q  267 gggggtgtctttggtcttagaaggcataaaccgcctttcctatcttctagaa 318  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  3230058 gggggcgtctttggtcttagaaggcataaaccgcctttcccatcttctagaa 3230109  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 3229810 - 3229902
Alignment:
Q  18 tttttgagggagaagagtgaagcaaatgaactaatagataaatgggtcattatgaagaacctgccgggtgaggtatgtaatagtgttaagaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3229810 tttttgagggagaagagtgaagcaaatgaactaatagataaatgggtcattatgaagaacctgccgggagaggtatgtaatagtgttaagaaa 3229902  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 3181625 - 3181570
Alignment:
Q  18 tttttgagggagaagagtgaagcaaatgaactaatagataaatgggtcattatgaa 73  Q
    ||||||| ||| ||||| |||||| |||||||||||||||||||| |||| |||||    
T  3181625 tttttgaaggaaaagagagaagcagatgaactaatagataaatggatcataatgaa 3181570  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 47827346 - 47827400
Alignment:
Q  210 tggaccgccgatattatattaaaggcttgccagccctcaataaaggcttgccgac 264  Q
    ||||||| |||||||||||||| |||||| |  ||||||||||||||||||||||    
T  47827346 tggaccgtcgatattatattaagggcttgtcgtccctcaataaaggcttgccgac 47827400  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 47832040 - 47832094
Alignment:
Q  210 tggaccgccgatattatattaaaggcttgccagccctcaataaaggcttgccgac 264  Q
    ||||||||| |||||||||||| |||||| |  ||||||||||||||||||||||    
T  47832040 tggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgac 47832094  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 4330066 - 4330116
Alignment:
Q  210 tggaccgccgatattatattaaaggcttgccagccctcaataaaggcttgc 260  Q
    |||||| || ||| |||||||| ||||||||| ||||||||||||||||||    
T  4330066 tggacctccaataatatattaagggcttgccatccctcaataaaggcttgc 4330116  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 33123822 - 33123777
Alignment:
Q  210 tggaccgccgatattatattaaaggcttgccagccctcaataaagg 255  Q
    |||||| ||||||||||||||| ||||||| |||| ||||||||||    
T  33123822 tggaccaccgatattatattaagggcttgctagccttcaataaagg 33123777  T

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