View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9135_low_32 (Length: 290)
Name: NF9135_low_32
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 260518 - 260238
Alignment:
| Q |
1 |
taacagctctttcattccattgaggtaatctttgatttgatagaaaacttagagaattgtctaaagttcnnnnnnnatgttcaagagcaacttatgcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
260518 |
taacagctctttcattccattgaggtaatctttgatttgatagaaaacttagagaattgtctaaagttctttttttatgttcaagagcaacttatgcttc |
260419 |
T |
|
| Q |
101 |
tttcatagtgtaagatgggttgaaagttgatgagtggatttgagttttcattttgttcatttaaatgggctgtaacatatattcaaatacattgaagaaa |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
260418 |
tttcgtagtgtaagatgggttgaaagttgatgagtggatttgagttttcattttgttcatttaaatgggctgcaacatatattcaaatacattgaagaaa |
260319 |
T |
|
| Q |
201 |
ggactagagcattgaagtaaggagataaggctttatgaggaagaatgacattcacggactggttacactttagagaataat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
260318 |
ggactagagcattgaagtaaggagataaggctttatgaggaagaatgacattcacagactggttacactttagagattaat |
260238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University