View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9135_low_34 (Length: 285)

Name: NF9135_low_34
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9135_low_34
NF9135_low_34
[»] chr1 (9 HSPs)
chr1 (1-252)||(48417562-48417813)
chr1 (211-263)||(23398413-23398466)
chr1 (212-263)||(45115263-45115315)
chr1 (217-263)||(24981934-24981981)
chr1 (214-263)||(3013703-3013753)
chr1 (215-263)||(8338673-8338722)
chr1 (224-263)||(14967318-14967358)
chr1 (212-263)||(33939390-33939442)
chr1 (212-263)||(46412698-46412750)
[»] chr2 (18 HSPs)
chr2 (210-262)||(11726489-11726541)
chr2 (211-263)||(13994283-13994335)
chr2 (211-263)||(13988385-13988437)
chr2 (211-263)||(8510598-8510651)
chr2 (212-263)||(15119772-15119824)
chr2 (212-263)||(26003430-26003482)
chr2 (212-263)||(38465784-38465836)
chr2 (212-262)||(27331853-27331904)
chr2 (211-263)||(11726588-11726641)
chr2 (211-263)||(13882776-13882829)
chr2 (211-263)||(14022901-14022954)
chr2 (210-262)||(14308740-14308793)
chr2 (224-263)||(1961402-1961442)
chr2 (212-263)||(15119870-15119922)
chr2 (212-263)||(21183420-21183472)
chr2 (212-263)||(26234117-26234169)
chr2 (224-263)||(31024178-31024218)
chr2 (212-263)||(42530585-42530637)
[»] chr7 (10 HSPs)
chr7 (211-263)||(5950287-5950340)
chr7 (212-263)||(10095714-10095766)
chr7 (212-263)||(25245236-25245288)
chr7 (212-263)||(2943207-2943259)
chr7 (212-263)||(6455544-6455596)
chr7 (218-263)||(3882904-3882949)
chr7 (212-260)||(43103067-43103116)
chr7 (212-263)||(8447810-8447862)
chr7 (224-263)||(23818431-23818471)
chr7 (212-263)||(41404010-41404062)
[»] chr8 (9 HSPs)
chr8 (212-263)||(10934696-10934748)
chr8 (210-262)||(10117064-10117117)
chr8 (211-263)||(27518408-27518461)
chr8 (212-263)||(1662670-1662722)
chr8 (211-263)||(7484612-7484664)
chr8 (212-263)||(7484710-7484762)
chr8 (212-263)||(11295659-11295711)
chr8 (212-263)||(13496528-13496580)
chr8 (208-263)||(33070258-33070314)
[»] chr3 (17 HSPs)
chr3 (212-263)||(331891-331943)
chr3 (211-260)||(7882275-7882325)
chr3 (211-263)||(52215973-52216026)
chr3 (212-263)||(8504845-8504897)
chr3 (211-263)||(54595883-54595935)
chr3 (212-263)||(42930110-42930160)
chr3 (212-261)||(9170107-9170157)
chr3 (210-263)||(30519691-30519745)
chr3 (210-263)||(38677558-38677612)
chr3 (211-259)||(7829140-7829189)
chr3 (211-263)||(12744994-12745047)
chr3 (211-263)||(27224574-27224627)
chr3 (215-263)||(40639802-40639851)
chr3 (211-263)||(48191709-48191762)
chr3 (215-262)||(12744899-12744947)
chr3 (212-263)||(22496946-22496998)
chr3 (224-263)||(54595797-54595837)
[»] chr4 (8 HSPs)
chr4 (214-263)||(23568473-23568523)
chr4 (212-263)||(14450952-14451004)
chr4 (212-263)||(54713093-54713145)
chr4 (215-263)||(19878145-19878194)
chr4 (207-263)||(53176298-53176355)
chr4 (211-262)||(36786144-36786196)
chr4 (212-263)||(47308109-47308161)
chr4 (211-263)||(55935982-55936034)
[»] chr5 (6 HSPs)
chr5 (212-260)||(10437733-10437782)
chr5 (212-263)||(14772543-14772595)
chr5 (212-263)||(43117381-43117433)
chr5 (212-262)||(15549419-15549470)
chr5 (215-262)||(11795734-11795782)
chr5 (212-263)||(26141750-26141802)
[»] chr6 (11 HSPs)
chr6 (219-263)||(14031672-14031716)
chr6 (211-263)||(15517085-15517137)
chr6 (212-263)||(26527185-26527237)
chr6 (208-263)||(31398319-31398375)
chr6 (211-263)||(34379730-34379782)
chr6 (217-263)||(26527283-26527330)
chr6 (211-263)||(6560750-6560803)
chr6 (212-263)||(8146042-8146094)
chr6 (212-263)||(18886303-18886355)
chr6 (212-263)||(32254914-32254966)
chr6 (224-263)||(34379828-34379868)
[»] scaffold0149 (1 HSPs)
scaffold0149 (213-263)||(24699-24750)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 48417562 - 48417813
Alignment:
Q  1 aaaagctttagacattcaacaataacataactgccattaaaatttttcatcaatgcaacagtgatatgcttcatggtatacacaactacatattgcatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48417562 aaaagctttagacattcaacaataacataactgccattaaaatttttcatcaatgcaacagtgatatgcttcatggtatacacaactacatattgcatga 48417661  T
Q  101 acagacacttaatattcttcagcattatctgcataacgcgagttctgcaaaaagaataaaatagaattacacaatttaattaagagaataaaatttaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  48417662 acagacacttaatattcttcagcattatctgcataacgcgagttctacaaaataaataaaatagaattacacaatttaattaagagaataaaatttaaat 48417761  T
Q  201 ctaatggtttgtacaccctccgctcacaattataagcaaaaataacatttta 252  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48417762 ctaatggtttgaacaccctccgctcacaattataagcaaaaataacatttta 48417813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 23398413 - 23398466
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  23398413 gtacaccctccggtcactattataagcaaaaactaacattttagattcattcat 23398466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 45115315 - 45115263
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||||||||||    
T  45115315 tacaccctccggtcactattataagcaaaaatctacattttagattcattcat 45115263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 24981981 - 24981934
Alignment:
Q  217 cctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  24981981 cctccggtcactattataagcaaaaatcaacattttagattcattcat 24981934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 3013753 - 3013703
Alignment:
Q  214 caccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  3013753 caccctccggtcactattataagcaaaaattaacattttacattcattcat 3013703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 8338673 - 8338722
Alignment:
Q  215 accctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||||    
T  8338673 accctccggtcactattataagcaaaaatctacattttagattcattcat 8338722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 14967358 - 14967318
Alignment:
Q  224 tcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  14967358 tcactattataagcaaaaatcaacattttagattcattcat 14967318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 33939442 - 33939390
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  33939442 tacaccctccggtcactattataagcaaaagtttacattttagattcattcat 33939390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 46412698 - 46412750
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||| |||| |||| |||||||||||||| ||| |||||||||||||||||    
T  46412698 tacaccatccgatcactattataagcaaaaattaatattttagattcattcat 46412750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 11726489 - 11726541
Alignment:
Q  210 tgtacaccctccgctcacaattataagcaaaaataacattttagattcattca 262  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  11726489 tgtacaccctccggtcactattataagcaaaaataacattttagattcattca 11726541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 13994335 - 13994283
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  13994335 gtacaccctccggtcactattataagcaaaactaacattttagattcattcat 13994283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 13988437 - 13988385
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    |||||||||||| |||| |||||||| |||| |||||||||||||||||||||    
T  13988437 gtacaccctccggtcactattataagtaaaactaacattttagattcattcat 13988385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 8510651 - 8510598
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||||||||| |||| |||||||||||||| ||||||||| |||||||||||    
T  8510651 gtacaccctccggtcactattataagcaaaaactaacattttggattcattcat 8510598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 15119772 - 15119824
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||| || |||| ||||||||||||||| ||||||||||||||||||||    
T  15119772 tacacccttcggtcactattataagcaaaaattaacattttagattcattcat 15119824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 26003430 - 26003482
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  26003430 tacaccctccggtcacaattataagcaaaaatcaatattttaggttcattcat 26003482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 38465784 - 38465836
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||    
T  38465784 tacaccctccggtcactattataagcaaaaatcaacattttagattaattcat 38465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 27331904 - 27331853
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattca 262  Q
    |||| |||||| |||| ||||||||||||||| |||||||||||||||||||    
T  27331904 tacatcctccggtcactattataagcaaaaatcaacattttagattcattca 27331853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 11726641 - 11726588
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||| |||||  |||| ||||||||||||||| ||||||||||||||||||||    
T  11726641 gtacatcctccagtcactattataagcaaaaattaacattttagattcattcat 11726588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 13882829 - 13882776
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||||||||  |||| ||||||| |||||| |||||||||||||||||||||    
T  13882829 gtacaccctcccgtcactattataaacaaaaactaacattttagattcattcat 13882776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 14022954 - 14022901
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||||||||  |||| ||||||| |||||| |||||||||||||||||||||    
T  14022954 gtacaccctcctgtcactattataatcaaaaactaacattttagattcattcat 14022901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 14308793 - 14308740
Alignment:
Q  210 tgtacaccctccgctcacaattataagca-aaaataacattttagattcattca 262  Q
    ||||||||||||| |||||| |||||||| ||||| | ||||||||||||||||    
T  14308793 tgtacaccctccgatcacaaatataagcaaaaaatcatattttagattcattca 14308740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 1961442 - 1961402
Alignment:
Q  224 tcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  1961442 tcactattataagcaaaaatcaacattttagattcattcat 1961402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 15119922 - 15119870
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||| ||||||    
T  15119922 tacaccctccggtcactattataagcaaaaatctacattttagatttattcat 15119870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 21183472 - 21183420
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||| |||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  21183472 tacatcctccggtcactgttataagcaaaaatcaacattttagattcattcat 21183420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 26234169 - 26234117
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  26234169 tacaccctccggtcactattataagcaaaagtttacattttagattcattcat 26234117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 31024178 - 31024218
Alignment:
Q  224 tcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  31024178 tcactattataagcaaaaatcaacattttagattcattcat 31024218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 42530637 - 42530585
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||| ||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  42530637 tacactctccggtcactattataagcaaaaattaacattttacattcattcat 42530585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 5950340 - 5950287
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  5950340 gtacaccctccggtcactattataagcaaaaactaacattttagattcattcat 5950287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 10095714 - 10095766
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  10095714 tacaccctccggtcactattataagcaaaaattaacattttagattcattcat 10095766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 25245288 - 25245236
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  25245288 tacaccctccggtcactattataagcaaaaatcaacattttagattcattcat 25245236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 2943207 - 2943259
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||| || |||| ||||||||||||||| ||||||||||||||||||||    
T  2943207 tacacccttcggtcactattataagcaaaaatcaacattttagattcattcat 2943259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 6455544 - 6455596
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  6455544 tacaccctccgatcactattataagcaaaaatttacattttagattcattcat 6455596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 3882949 - 3882904
Alignment:
Q  218 ctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    ||||| |||||||||||| |||||  ||||||||||||||||||||    
T  3882949 ctccggtcacaattataaccaaaatcaacattttagattcattcat 3882904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 43103067 - 43103116
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcatt 260  Q
    ||||||||||| |||| |||||||||||||| |||||||||| |||||||    
T  43103067 tacaccctccggtcactattataagcaaaaattaacattttaaattcatt 43103116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 8447862 - 8447810
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||| || |||| |||||||||||||||  |||||||||||||||||||    
T  8447862 tacacccttcggtcactattataagcaaaaatctacattttagattcattcat 8447810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 23818431 - 23818471
Alignment:
Q  224 tcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  23818431 tcactattataagcaaaaatcaacattttagattcattcat 23818471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 41404010 - 41404062
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||| |||||| |||| |||||||||||||| || ||||||||||||||||||    
T  41404010 tacatcctccggtcactattataagcaaaaattatcattttagattcattcat 41404062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 10934748 - 10934696
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  10934748 tacaccctccggtcactattataagcaaaaatcaacattttagattcattcat 10934696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 10117117 - 10117064
Alignment:
Q  210 tgtacaccctccgctcacaattataagcaaaaa-taacattttagattcattca 262  Q
    |||||||| |||| |||| |||||||||||||| | ||||||||||||||||||    
T  10117117 tgtacaccatccggtcactattataagcaaaaatttacattttagattcattca 10117064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 27518461 - 27518408
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||||||| |||| ||||||| |||||||  |||||||||||||||||||    
T  27518461 gtacaccctccggtcactattataaacaaaaatctacattttagattcattcat 27518408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 1662722 - 1662670
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaata-acattttagattcattcat 263  Q
    ||||| ||||| |||| || ||||||||||||| |||||||||||||||||||    
T  1662722 tacactctccggtcactataataagcaaaaatatacattttagattcattcat 1662670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 7484612 - 7484664
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    |||||||||||| ||||  ||||||||||||| |  |||||||||||||||||    
T  7484612 gtacaccctccggtcactgttataagcaaaaacataattttagattcattcat 7484664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 7484762 - 7484710
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||| || |||  ||||||||||||||| ||||||||||||||||||||    
T  7484762 tacaccctacggtcattattataagcaaaaatcaacattttagattcattcat 7484710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 11295659 - 11295711
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||| |||| |||| ||||||||||||||| |||||||||||| |||||||    
T  11295659 tacaccttccggtcactattataagcaaaaatcaacattttagatacattcat 11295711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 13496580 - 13496528
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||| | |||||||| ||||||||||    
T  13496580 tacaccctccggtcactattataagcaaaaatttacattttaaattcattcat 13496528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 33070314 - 33070258
Alignment:
Q  208 tttgtacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 263  Q
    ||||||||||||||| |||| |||||||||||||  |  ||||||||||||||||||    
T  33070314 tttgtacaccctccggtcactattataagcaaaattttgcattttagattcattcat 33070258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 331943 - 331891
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  331943 tacaccctccggtcactattataagcaaaaattaacattttagattcattcat 331891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 7882275 - 7882325
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcatt 260  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  7882275 gtacaccctccggtcactattataagcaaaaattaacattttagattcatt 7882325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 52216026 - 52215973
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||    
T  52216026 gtacaccctccggtcactattataagcaaaaatcaacattttagattcactcat 52215973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 8504845 - 8504897
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||||||||||    
T  8504845 tacaccctccggtcactattataagcaaaaatctacattttagattcattcat 8504897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 54595935 - 54595883
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    |||||||||||| |||| |||||||| |||||||  |||||||||||||||||    
T  54595935 gtacaccctccggtcactattataagtaaaaatataattttagattcattcat 54595883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 42930160 - 42930110
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||||||||    
T  42930160 tacaccctccgatcactattataagcaaaaa-aacattttaaattcattcat 42930110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 9170107 - 9170157
Alignment:
Q  212 tacaccctccgctcacaattataagc-aaaaataacattttagattcattc 261  Q
    ||||||||||| |||| ||||||||| |||||| |||||||||||||||||    
T  9170107 tacaccctccggtcactattataagcaaaaaattacattttagattcattc 9170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 30519745 - 30519691
Alignment:
Q  210 tgtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||| | |||| ||||||||||||||  ||||||||||||||||||||    
T  30519745 tgtacaccctctggtcactattataagcaaaaaccaacattttagattcattcat 30519691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 38677558 - 38677612
Alignment:
Q  210 tgtacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 263  Q
    ||||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  38677558 tgtacaccctccggtcactattataagcaaaagtttacattttagattcattcat 38677612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 7829189 - 7829140
Alignment:
Q  211 gtacaccctccgctcacaattataagc-aaaaataacattttagattcat 259  Q
    |||||||||||| |||| ||||||||| |||| |||||||||||||||||    
T  7829189 gtacaccctccgatcactattataagctaaaattaacattttagattcat 7829140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 12745047 - 12744994
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||| || |||| |||||||||||||| ||||||||||||| |||||||    
T  12745047 gtacacccttcggtcactattataagcaaaaattaacattttagatacattcat 12744994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 27224574 - 27224627
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||||||| |||| ||||||| ||||||| ||||||||||||| ||||||    
T  27224574 gtacaccctccggtcactattataaacaaaaatcaacattttagatttattcat 27224627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 40639851 - 40639802
Alignment:
Q  215 accctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  40639851 accctccggtcactattataagcaaaaattaacattttaaattcattcat 40639802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 48191709 - 48191762
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||| |||||| |||| ||||||| ||||||| ||||||||||||||||||||    
T  48191709 gtacatcctccggtcactattataaacaaaaattaacattttagattcattcat 48191762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 12744899 - 12744947
Alignment:
Q  215 accctccgctcacaattataagcaaaaa-taacattttagattcattca 262  Q
    |||||||| |||| |||||||||||||| | ||||||||||||||||||    
T  12744899 accctccggtcactattataagcaaaaacttacattttagattcattca 12744947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 22496946 - 22496998
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||  |||| |||||||||||||| ||| |||||||||||||||||    
T  22496946 tacaccctccagtcactattataagcaaaaattaatattttagattcattcat 22496998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 54595797 - 54595837
Alignment:
Q  224 tcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  54595797 tcactattataagcaaaaatcaacattttagattcattcat 54595837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 23568523 - 23568473
Alignment:
Q  214 caccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  23568523 caccctccggtcactattataagcaaaaactaacattttagattcattcat 23568473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 14450952 - 14451004
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||||||||||    
T  14450952 tacaccctccgatcactattataagcaaaaatctacattttagattcattcat 14451004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 54713093 - 54713145
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  54713093 tacaccctccggtcactattataagcaaaaatttacattttagattcattcat 54713145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 19878145 - 19878194
Alignment:
Q  215 accctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||| |||| | ||||||||||||| ||||||||||||||||||||    
T  19878145 accctccggtcactaatataagcaaaaattaacattttagattcattcat 19878194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 53176298 - 53176355
Alignment:
Q  207 gtttgtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||| ||||||||||| |||| |||||||| ||||| |||||||||| ||||||||||    
T  53176298 gtttttacaccctccgatcactattataagtaaaaattaacattttatattcattcat 53176355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 36786144 - 36786196
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattca 262  Q
    |||||||||||| || | ||||||| ||||||| |||||||||||||||||||    
T  36786144 gtacaccctccggtccctattataaacaaaaatcaacattttagattcattca 36786196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 47308109 - 47308161
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||||| || |||| ||||||||||||||| |||||||| |||||||||||    
T  47308109 tacacccttcgatcactattataagcaaaaatcaacattttggattcattcat 47308161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 55935982 - 55936034
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    ||||| |||||| |||| |||||||||||||| |  |||||||||||||||||    
T  55935982 gtacatcctccggtcactattataagcaaaaacataattttagattcattcat 55936034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 10437782 - 10437733
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcatt 260  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  10437782 tacaccctccggtcactattataagcaaaaatcaacattttagattcatt 10437733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 14772543 - 14772595
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| ||||||||||||||| |||||||||| |||||||||    
T  14772543 tacaccctccggtcactattataagcaaaaatcaacattttaggttcattcat 14772595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 43117381 - 43117433
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||||||    
T  43117381 tacaccctccgatcactattataagcaaaaatcaatattttagattcattcat 43117433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 15549470 - 15549419
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattca 262  Q
    ||||||||||| |||| ||||||| ||||||| |||||||||||||||||||    
T  15549470 tacaccctccggtcactattataaacaaaaatcaacattttagattcattca 15549419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 11795734 - 11795782
Alignment:
Q  215 accctccgctcacaattataagcaaaaat-aacattttagattcattca 262  Q
    |||||||| |||| | ||||||||||||| |||||||||||||||||||    
T  11795734 accctccggtcactaatataagcaaaaatcaacattttagattcattca 11795782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 26141750 - 26141802
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  26141750 tacaccctccggtcactattataagcaaaagtttacattttagattcattcat 26141802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 14031672 - 14031716
Alignment:
Q  219 tccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    |||| |||| |||||||||||||||||||| ||||||||||||||    
T  14031672 tccggtcactattataagcaaaaataacatcttagattcattcat 14031716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 15517085 - 15517137
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    |||||||||||| |||| |||||||||||||| |  |||||||||||||||||    
T  15517085 gtacaccctccggtcactattataagcaaaaacataattttagattcattcat 15517137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 26527185 - 26527237
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||| |||||||    
T  26527185 tacaccctccgatcactattataagcaaaaatcaacattttagatacattcat 26527237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 31398375 - 31398319
Alignment:
Q  208 tttgtacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 263  Q
    ||||||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  31398375 tttgtacaccctccggtcactattataagcaaaagtttacattttagattcattcat 31398319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 34379730 - 34379782
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 263  Q
    |||||||||||| |||| |||||||||||||| |  |||||||||||||||||    
T  34379730 gtacaccctccggtcactattataagcaaaaacataattttagattcattcat 34379782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 26527330 - 26527283
Alignment:
Q  217 cctccgctcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  26527330 cctccgttcactattataagcaaaaattaacattttagattcattcat 26527283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 6560803 - 6560750
Alignment:
Q  211 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||||||||| |||| | |||||||||||| | |||||||||||||||||||    
T  6560803 gtacaccctccggtcactaatataagcaaaaaattacattttagattcattcat 6560750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 8146094 - 8146042
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||| |||| | |||||||||||| | |||||||||||||||||||    
T  8146094 tacaccctccggtcactaatataagcaaaaaattacattttagattcattcat 8146042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 18886303 - 18886355
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    ||||||||||  |||| |||||||||||||| ||| |||||||||||||||||    
T  18886303 tacaccctccagtcactattataagcaaaaattaatattttagattcattcat 18886355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 32254966 - 32254914
Alignment:
Q  212 tacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 263  Q
    ||||||||||| |||| |||||||||||||  ||| |||||||||||||||||    
T  32254966 tacaccctccgatcactattataagcaaaagttaatattttagattcattcat 32254914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 34379868 - 34379828
Alignment:
Q  224 tcacaattataagcaaaaat-aacattttagattcattcat 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  34379868 tcactattataagcaaaaatcaacattttagattcattcat 34379828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 24750 - 24699
Alignment:
Q  213 acaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 263  Q
    |||||||||| |||| |||||||||||||| ||| |||||||||||||||||    
T  24750 acaccctccggtcactattataagcaaaaattaatattttagattcattcat 24699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University