View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_low_4 (Length: 572)
Name: NF9135_low_4
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_4 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 15 - 554
Target Start/End: Original strand, 5550 - 6089
Alignment:
| Q |
15 |
aatactatatgtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatga |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5550 |
aatactatatgtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatga |
5649 |
T |
|
| Q |
115 |
caaccgacacttcagaataaagatgtgtccggtatccgatgtgtgaatgtcgagtttggtgtttgtgtctatttcaatgcttcatgtctattttgttaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5650 |
caaccgacacttcagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaa |
5749 |
T |
|
| Q |
215 |
atggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5750 |
atggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatc |
5849 |
T |
|
| Q |
315 |
aatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaa |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5850 |
aatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaa |
5949 |
T |
|
| Q |
415 |
aggttgctcactctttgctcctttactcttacaggcaaatatgtatcaatgtgtttctcaggatcaaatgtgctcttattgttgtctcctttatcttcac |
514 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5950 |
aggttgctcactctttgctcctttactcttacaggcaaatatgtatcaatatgtttctcaagatcaaatgtgctcttattgttgtctcctttatcttcac |
6049 |
T |
|
| Q |
515 |
catttaggacaaaatctttcaaatcctctagttcttttac |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
6050 |
catttaggacaaaatctttcaaatcctctagttcttttac |
6089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 15 - 554
Target Start/End: Original strand, 5550 - 6089
Alignment:
| Q |
15 |
aatactatatgtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5550 |
aatactatatgtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatga |
5649 |
T |
|
| Q |
115 |
caaccgacacttcagaataaagatgtgtccggtatccgatgtgtgaatgtcgagtttggtgtttgtgtctatttcaatgcttcatgtctattttgttaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5650 |
caaccgacacttcagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaa |
5749 |
T |
|
| Q |
215 |
atggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatc |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5750 |
atggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatc |
5849 |
T |
|
| Q |
315 |
aatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5850 |
aatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaa |
5949 |
T |
|
| Q |
415 |
aggttgctcactctttgctcctttactcttacaggcaaatatgtatcaatgtgtttctcaggatcaaatgtgctcttattgttgtctcctttatcttcac |
514 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5950 |
aggttgctcactctttgctcctatactcttacaggcaaatatgtatcaatgtgtttctcaagatcaaatgtgctcttattgttgtctcctttatcttcac |
6049 |
T |
|
| Q |
515 |
catttaggacaaaatctttcaaatcctctagttcttttac |
554 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
6050 |
catttaggacaaaatctttcaaatcctctagttcttttac |
6089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 49706439 - 49706539
Alignment:
| Q |
265 |
acaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcattt |
364 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||| || ||||||||| ||| |
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|
| T |
49706439 |
acaaagaggagcaatatcctttcccagaactgattccccggaagactatctattgccatgtaagcaaaatatccccataaaaccgaggttggtatccttt |
49706538 |
T |
|
| Q |
365 |
t |
365 |
Q |
| |
|
| |
|
|
| T |
49706539 |
t |
49706539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 2235423 - 2235350
Alignment:
| Q |
268 |
aaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatcccca |
341 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| |||||||| |||||||| |
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|
| T |
2235423 |
aaaagaagcaatatcctttcccaaaattggttccctgggagactatcaattgccatataagcaaaatatcccca |
2235350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 12308833 - 12308781
Alignment:
| Q |
313 |
tcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttt |
365 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || || ||||| |||||||| |
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|
| T |
12308833 |
tcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcatttt |
12308781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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