View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_low_42 (Length: 270)
Name: NF9135_low_42
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 1316224 - 1316434
Alignment:
| Q |
18 |
caatttactctgtcacatgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcga |
117 |
Q |
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| T |
1316224 |
caatttactctgtcacatgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcga |
1316323 |
T |
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| Q |
118 |
aaaagtaatgaacgagttcaaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgt |
217 |
Q |
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| T |
1316324 |
aaaagtaatgaacgagttcaaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgcaattttacataaacatattgt |
1316423 |
T |
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| Q |
218 |
ccagagcctaa |
228 |
Q |
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| T |
1316424 |
ccagagcctaa |
1316434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 1316474 - 1316513
Alignment:
| Q |
225 |
ctaaatttaaccaagataactagtttttccagtattatct |
264 |
Q |
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| T |
1316474 |
ctaaatttaaccaagataactagtttttccagcattatct |
1316513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 43483760 - 43483871
Alignment:
| Q |
27 |
ctgtcacatgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaat |
126 |
Q |
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| T |
43483760 |
ctgtcacatgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaat |
43483859 |
T |
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| Q |
127 |
gaacgagttcaa |
138 |
Q |
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| T |
43483860 |
gaatgagttcaa |
43483871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 43486463 - 43486549
Alignment:
| Q |
142 |
gactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
228 |
Q |
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| T |
43486463 |
gactattgaagcaattaatgtatttgacttgacattaaaatcaaacaaacattgcaattttacataaacatattgtccagagcctaa |
43486549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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