View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_low_47 (Length: 242)
Name: NF9135_low_47
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 33093398 - 33093596
Alignment:
| Q |
26 |
tgtagcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagattt |
125 |
Q |
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| T |
33093398 |
tgtagcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagattt |
33093497 |
T |
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| Q |
126 |
gtgcagcatctaaatcttcaaaaggcaaagtttttgaatgatgatgacaactcctcaatgttgtatccatatcttcgcgatttggtgtctataaatgtc |
224 |
Q |
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| T |
33093498 |
gtgcagcatctaaatcttcaaaatgcaaagtttttgaatgatgatgacaactcctcaatgttgtatccatatcttcgcgatttggtgtctataaatgtc |
33093596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 33708500 - 33708626
Alignment:
| Q |
41 |
tcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaat |
140 |
Q |
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| T |
33708500 |
tcttcctttgaggaaacttgtcctccaaggtcgctgccaatatacttataccggtatctcttgtttcttgtcaaagtgtcgatctctgcagcatctagat |
33708599 |
T |
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| Q |
141 |
cttcaaaaggcaaagtttttgaatgat |
167 |
Q |
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| T |
33708600 |
attcaacgtgcaaagtttttgaatgat |
33708626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 36810493 - 36810625
Alignment:
| Q |
35 |
tgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcat |
134 |
Q |
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| T |
36810493 |
tgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagctt |
36810592 |
T |
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| Q |
135 |
ctaaatcttcaaaaggcaaagtttttgaatgat |
167 |
Q |
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| T |
36810593 |
ctagatcttcaagatgcaaagtttttgaatgat |
36810625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 33714390 - 33714461
Alignment:
| Q |
96 |
atctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaatgat |
167 |
Q |
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| T |
33714390 |
atctcttgtttcttgtcaaattgtcgatctctgcagcatctagatcttcaatgtgcaaagtttttgaatgat |
33714461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 37580306 - 37580429
Alignment:
| Q |
44 |
tcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatctt |
143 |
Q |
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| T |
37580306 |
tcctttgaggaaacttgtcctcaaagattgctccaactacacatattctgggatatattatttattgtcaaagtgtcaatcactgaagcatctagatatt |
37580405 |
T |
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| Q |
144 |
caaaaggcaaagtttttgaatgat |
167 |
Q |
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| T |
37580406 |
caaaaagcaacgtttttgaatgat |
37580429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 18723872 - 18723944
Alignment:
| Q |
92 |
cgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaat |
164 |
Q |
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| T |
18723872 |
cgggatctcttatctcttgtcaaagtgtcgatttctgcaacatctagatctttaaaatgcaatctttttgaat |
18723944 |
T |
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