View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9135_low_52 (Length: 232)

Name: NF9135_low_52
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9135_low_52
NF9135_low_52
[»] chr4 (2 HSPs)
chr4 (14-161)||(38849213-38849360)
chr4 (158-216)||(38849134-38849192)
[»] chr8 (11 HSPs)
chr8 (44-214)||(38317999-38318170)
chr8 (44-129)||(38314587-38314672)
chr8 (62-160)||(38322103-38322198)
chr8 (60-128)||(38307253-38307321)
chr8 (166-214)||(38323022-38323070)
chr8 (166-212)||(38301492-38301538)
chr8 (51-149)||(38326810-38326908)
chr8 (168-207)||(38326939-38326978)
chr8 (60-89)||(38301359-38301388)
chr8 (165-202)||(38307380-38307417)
chr8 (166-214)||(38322229-38322277)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 38849360 - 38849213
Alignment:
Q  14 tgtgtgtgattgtattgttttgatagggtaaattttgttattaagttcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||||||    
T  38849360 tgtgtgtgattgtattgttttgatagggtaaattttgttattaagttcttcaattatgatatgtagatggagaagacgatgacgacgactttgaagaaat 38849261  T
Q  114 aaagaatgaaattgacaatgatgaaaaaatggagcaagcttctaatga 161  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38849260 aaagaatgaaattgataatgatgaaaaaatggagcaagcttctaatga 38849213  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 38849192 - 38849134
Alignment:
Q  158 atgatgtcgatgatgattgatttgcttgtatttatttaactttggtttatcatgtttat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38849192 atgatgtcgatgatgattgatttgcttgtatttatttaactttggtttatcatgtttat 38849134  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 38317999 - 38318170
Alignment:
Q  44 aattttgttattaagttcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattgacaatgatgaaaaaat 143  Q
    |||||| |||||||  ||||||||| |||||||||||  ||||||  ||||  || ||||| || | ||||| |||||||||||| |||| |||||||||    
T  38317999 aattttattattaacctcttcaattgtgatatgtagacagagaaggcgacagagatgacttggatggaataatgaatgaaattgataatggtgaaaaaat 38318098  T
Q  144 ggagcaagcttct-aatgatgtcgatgatgattgatttgcttgtatttatttaactttggtttatcatgttt 214  Q
    || |||||| |   ||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  38318099 ggtgcaagcgtgacaatgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgttt 38318170  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 38314587 - 38314672
Alignment:
Q  44 aattttgttattaagttcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattgac 129  Q
    ||||| ||||||||  ||||| |||||||||||||||||||||||| ||| | || |||||||||||||||| |||||||||||||    
T  38314587 aatttagttattaatctcttcgattatgatatgtagatggagaagacgacgacgatgactttgaagaaataatgaatgaaattgac 38314672  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 38322103 - 38322198
Alignment:
Q  62 ttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattgacaatgatgaaaaaatggagcaagcttctaatg 160  Q
    |||||||||||||||||| ||||||||| ||| |||||   ||||||||||||| |||||||| ||||| ||||||  ||||||||||||| |||||||    
T  38322103 ttcaattatgatatgtagttggagaagacgacgatgac---tttgaagaaataatgaatgaaactgacagtgatgactaaatggagcaagcatctaatg 38322198  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 38307253 - 38307321
Alignment:
Q  60 tcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattga 128  Q
    |||||||||||||| |||||||||| |||| ||  | ||||||||||||||||||| ||||||||||||    
T  38307253 tcttcaattatgatttgtagatggaaaagacgatgaagacgactttgaagaaataatgaatgaaattga 38307321  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 38323022 - 38323070
Alignment:
Q  166 gatgatgattgatttgcttgtatttatttaactttggtttatcatgttt 214  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  38323022 gatgatgattgatttgcttgtatttacttaactttggtttatgatgttt 38323070  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 38301492 - 38301538
Alignment:
Q  166 gatgatgattgatttgcttgtatttatttaactttggtttatcatgt 212  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  38301492 gatgatgattgatttgcttgtatctatttaactttggtttataatgt 38301538  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 38326810 - 38326908
Alignment:
Q  51 ttattaagttcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattgacaatgatgaaaaaatggagca 149  Q
    |||||||  ||||||||| ||||||||||||| ||| || ||| |||| |||||||||||||  | ||| |||||||||   |||||||||||||||||    
T  38326810 ttattaacctcttcaattttgatatgtagatgaagaggatgacgatgatgactttgaagaaactatgaacgaaattgacggcgatgaaaaaatggagca 38326908  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 38326939 - 38326978
Alignment:
Q  168 tgatgattgatttgcttgtatttatttaactttggtttat 207  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  38326939 tgatgattgatttgcttgtatttatttaactttagtttat 38326978  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 89
Target Start/End: Original strand, 38301359 - 38301388
Alignment:
Q  60 tcttcaattatgatatgtagatggagaaga 89  Q
    ||||||||||||||||||||||||||||||    
T  38301359 tcttcaattatgatatgtagatggagaaga 38301388  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 38307380 - 38307417
Alignment:
Q  165 cgatgatgattgatttgcttgtatttatttaactttgg 202  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  38307380 cgatgatgatttatttgcttctatttatttaactttgg 38307417  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 38322229 - 38322277
Alignment:
Q  166 gatgatgattgatttgcttgtatttatttaactttggtttatcatgttt 214  Q
    ||||||| ||||||||||||||| ||||||||||  |||||| ||||||    
T  38322229 gatgatggttgatttgcttgtatctatttaacttctgtttatgatgttt 38322277  T

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