View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9135_low_8 (Length: 560)
Name: NF9135_low_8
Description: NF9135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9135_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 541
Target Start/End: Original strand, 425353 - 425866
Alignment:
| Q |
12 |
ttggtgttgtctattctttatccgtagtttgtaagttatatacaattattcttttgtcctttaatcacattaaagcaggcagtaacaagatgccaaaatt |
111 |
Q |
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| T |
425353 |
ttggtgttgtctattctttatccgtagtttgtaagttatatacaattattcttttgtcctttaatcacattaaagcaggcagtaacaagatgccaaaatt |
425452 |
T |
|
| Q |
112 |
cacaccgatgtaggagtgaatctaaagattaattaaattaaaccacacaattgcaaccnnnnnnngaagagaacaagataaaacagaaggaaaatgttga |
211 |
Q |
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| T |
425453 |
cacaccgatgtaggagtgaatctaaagattaattaaattaaaccacacaattgcaacca---------------aataaagaatagaaggaaaatgttga |
425537 |
T |
|
| Q |
212 |
gcaagttgggttccnnnnnnngccattattgacaacttccccctttgcaatatactatattacttccatggtatttaattccgtgaagttaatttgtaca |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
425538 |
gcaagttgggttcctttttt-gccattattgacaacttccccctttgcaatatactatattacttccatggtatttaattccgtgaagttaattggtaca |
425636 |
T |
|
| Q |
312 |
tgtcaaatcgtggtttggcatagtttaattaggtgagcttcatattttgattatctagttcggaccttacggtaatatcgatgataattaattattttga |
411 |
Q |
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|||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
425637 |
tgtcaaatcgtgttttggcatagttgaattaggtcagcttcatattttgattatctagttcggaccttacggtaatatcgataataattaattattttga |
425736 |
T |
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| Q |
412 |
gggaaccaatttaatgtgagagataaatatatgtaactacaagctaaaaattgttactaaggggaattaaaaatatagatggttaaaatggtggagccaa |
511 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
425737 |
gtgaaccaatttaatgtgagagataaatatatgtaactacaagctaaaaattgttactaaggggaattaaaaatatagatggttaaaatggtggagccaa |
425836 |
T |
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| Q |
512 |
agttaaatggtggtactcatacgtacgttt |
541 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
425837 |
agttaaatggtggtactcatacgtacgttt |
425866 |
T |
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