View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9136_low_1 (Length: 1040)
Name: NF9136_low_1
Description: NF9136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9136_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 484 - 1028
Target Start/End: Original strand, 36689523 - 36690052
Alignment:
| Q |
484 |
aaaaagatttacactaaacttaaattgagcttcaaagtaaaccaatgtttattaagatgagatcagattgattcgactcgaccaactcatttctagctct |
583 |
Q |
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| T |
36689523 |
aaaaagatttgcattaaacttaaattgagcttcaaagtaaaccaatatttattaagacgagatgagatccattcgactcgaccaactcatttctaactct |
36689622 |
T |
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| Q |
584 |
atatgtatgtaaagaaagtgaaaaagagttgttactttgaatccgtcaaaagaaggagggggcaatacattggttaa--------atttgaaatgaaaag |
675 |
Q |
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| T |
36689623 |
at------gtaaagaaagtgaaaaggagttgttactttgaatccctcaaaagaaggagggggcaatacattggttaaatacttaaatttgaaatgaaaag |
36689716 |
T |
|
| Q |
676 |
ggataaaacggtaaatggggtataacgtctcgtatgttagtgggttggctttacctatgcataactgataacactaacagacacaatttcactcacatca |
775 |
Q |
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| T |
36689717 |
ggataaaacggtaaatggggtataacgtctcgtatgatagtgggttggctttacctatacataactgataacactaacagacacaatttcactcacatca |
36689816 |
T |
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| Q |
776 |
caatttttcttgtgaatgagagtatttaaagtttaaacacgacaaaactagcgtgtggacactgaacgagcattcgtaaaatacgaaccaagttactgca |
875 |
Q |
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| T |
36689817 |
caatttttcttgtgaat--gagtatttaaagtttaaacacgacaaaactagcgtgtggacactgaacgagcattcgtaaaatacgaacc----------- |
36689903 |
T |
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| Q |
876 |
gaaaaagtgagtgagtgacccacactcaactattttatttcctattcnnnnnnngggtttccccctcgtgcaaatatcttaacttaaatctttttcatca |
975 |
Q |
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| T |
36689904 |
----aagtgagtgagtgacccacactcaactattttatttcctattctttttttgggtttccccctcgtgcaaatatcttaacttaaatctttttcatca |
36689999 |
T |
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| Q |
976 |
tcataataaacattacattaccagtattgtactacaaatactactagtataat |
1028 |
Q |
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| T |
36690000 |
tcataataaacattacattaccagtattgtactacaaatactactagtataat |
36690052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Original strand, 36689031 - 36689454
Alignment:
| Q |
20 |
cttaggatccaatataacacatgggcaatgagatatagttctggaattggggaaattcagatttggagatttaaaggtttatgaatttgaggaagaagat |
119 |
Q |
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| T |
36689031 |
cttaggatccaatataacacatgggcaatgagatatagttctggaattggggaaattcagatttggagatttaaaggtttatgaatttgaggaagaagat |
36689130 |
T |
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| Q |
120 |
gacattgaagat----ttaatgttggtaatggtcnnnnnnnaacaaaaggaagttttggcattgatgtacgctttcgttataattttggccaatttgttc |
215 |
Q |
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| T |
36689131 |
gacattgaagatgaatttaaaggt--ttatg----aattttaacaaaaggaagttttggcattgatgtacgctttcgtgataattttggccaatttgttc |
36689224 |
T |
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| Q |
216 |
atgcttactcatgatgatttcaatttgaggcttcagcggctgaaagcgaagctaccacccttcatgttgcaatgcgcaaattacgattgatagtgaatgt |
315 |
Q |
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| T |
36689225 |
atgcttactcatgatgatttcaatttgaggcttcaacggctgaaaccgaagctaccacccttcatgttgcaatgcgcaaactacgattgatagtgaatgt |
36689324 |
T |
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| Q |
316 |
cagcctttggtgaatgcagtacttattgggtgcccttacagaaacgaatataaaatgtttttatctagttgtagatatatgttctcctcaaatgctagat |
415 |
Q |
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| T |
36689325 |
cagcctttggtgaatgcaatacttattgggtgcccttacggaaacgaatatagaatgtttttatctagttgtagatatatgttctcctcaaatgctagat |
36689424 |
T |
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| Q |
416 |
tcattccatataagtaattgttattatatg |
445 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36689425 |
tcattccatataagtaattgttattatatg |
36689454 |
T |
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