View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9136_low_2 (Length: 420)
Name: NF9136_low_2
Description: NF9136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9136_low_2 |
 | |
|
| [»] scaffold0557 (5 HSPs) |
| | |
|
| [»] scaffold0115 (4 HSPs) |
| | |
|
| [»] scaffold0442 (5 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 41336794 - 41336388
Alignment:
| Q |
1 |
tggatcaaagcttgttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41336794 |
tggatcaaagcttgttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatctgcacccccttgt |
41336695 |
T |
|
| Q |
101 |
tgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41336694 |
tgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgagg |
41336595 |
T |
|
| Q |
201 |
tattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41336594 |
tattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtact |
41336495 |
T |
|
| Q |
301 |
catgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41336494 |
catgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttc |
41336395 |
T |
|
| Q |
401 |
ttctctg |
407 |
Q |
| |
|
||||||| |
|
|
| T |
41336394 |
ttctctg |
41336388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 20922236 - 20921838
Alignment:
| Q |
1 |
tggatcaaagcttgttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
20922236 |
tggatcaaagcttgttgttgagacatttgcttgcattggaacattagctacttcagcatcacgcactttgcaatgataatagctatttgcacccccttgt |
20922137 |
T |
|
| Q |
101 |
tgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20922136 |
tgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatccgggagtggcaaccatgttcataactggcattgaattactcatcattgagg |
20922037 |
T |
|
| Q |
201 |
tattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtact |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
20922036 |
tattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacctgaggatgcaagttt------acactaggagttggaaccatagtact |
20921943 |
T |
|
| Q |
301 |
catgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20921942 |
catgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattgataccgtgatttggaatcatagtactcatgttgttc |
20921843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 20903636 - 20903234
Alignment:
| Q |
1 |
tggatcaaagcttgttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgt |
100 |
Q |
| |
|
|||||||||| || | ||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||| |||||||||| |||||||||| |
|
|
| T |
20903636 |
tggatcaaaggtttctcttgaggcatttgcttgcattggaacattagctacttcagtattaggcactttgcagtgatagtagctatttggacccccttgt |
20903537 |
T |
|
| Q |
101 |
tgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
20903536 |
tgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatcctggagttgcaaccatgttcataactggcattggagtactcatcattgtag |
20903437 |
T |
|
| Q |
201 |
tattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20903436 |
tattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtact |
20903337 |
T |
|
| Q |
301 |
catgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20903336 |
catgatggtgttcttgttctgttgaacacttccggtgtagatttgatgttgcatgctttgattaacaccctgatttggaatcatagtactcatgttgttc |
20903237 |
T |
|
| Q |
401 |
ttc |
403 |
Q |
| |
|
||| |
|
|
| T |
20903236 |
ttc |
20903234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 31 - 407
Target Start/End: Complemental strand, 21006322 - 21005946
Alignment:
| Q |
31 |
ttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||| |||| ||| |||| ||||||||| || |
|
|
| T |
21006322 |
ttgcattggaacattagctacttcagcattatgcactttgtagtgatagtagctatttgcaaccccttgttggccataaaaactttggtccatttgaggc |
21006223 |
T |
|
| Q |
131 |
tgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgtt |
230 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||| |||||| || |
|
|
| T |
21006222 |
tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt |
21006123 |
T |
|
| Q |
231 |
gatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacact |
330 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21006122 |
gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacact |
21006023 |
T |
|
| Q |
331 |
tccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctctg |
407 |
Q |
| |
|
| ||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006022 |
ttcaggatagatttgacgctgcatgttttgattgacattgtgatttggaatcatagtactcatgttgttcttctctg |
21005946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 21005944 - 21005841
Alignment:
| Q |
268 |
ttgattaacaccaggagttggaaccatagtactcatgatggtgtt---cttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattg |
364 |
Q |
| |
|
||||| |||||||||| ||||| ||| |||||| ||| |||||| |||||| |||||||||||| || |||||||||| | |||||| ||||||| |
|
|
| T |
21005944 |
ttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattc |
21005845 |
T |
|
| Q |
365 |
acac |
368 |
Q |
| |
|
|||| |
|
|
| T |
21005844 |
acac |
21005841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 154 - 405
Target Start/End: Original strand, 5724 - 5981
Alignment:
| Q |
154 |
agttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagact |
253 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5724 |
agttgcaaccatgttcataacttgcattaaagtactcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagact |
5823 |
T |
|
| Q |
254 |
tgag---ga---tgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccagtgtagatttgac |
347 |
Q |
| |
|
||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
5824 |
tgaaactgaatgtgcatgttttgattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgac |
5923 |
T |
|
| Q |
348 |
gatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctc |
405 |
Q |
| |
|
| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5924 |
gttgcatgctttgattaacaccgtaatttggaatcatagtactcatgttgttcttctc |
5981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 153 - 405
Target Start/End: Complemental strand, 5329 - 5071
Alignment:
| Q |
153 |
gagttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagac |
252 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5329 |
gagttgcaaccatgttcgtaactggcattaaagcactcatcattgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagac |
5230 |
T |
|
| Q |
253 |
ttgagga------tgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccagtgtagatttga |
346 |
Q |
| |
|
||||| |||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
5229 |
ttgagacagcacgtgcatgttttcattaacacttggagttggaaccatagtactcacgatggtgttcttgttttgttgaacacttctagggtagatttga |
5130 |
T |
|
| Q |
347 |
cgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctc |
405 |
Q |
| |
|
|| | |||||||| ||| |||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
5129 |
cgctacatgctttaattaacactgtgatttagaatcatagtattcatgttgttcttctc |
5071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 5451 - 5328
Alignment:
| Q |
4 |
atcaaagcttgttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgttgc |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| | |||||||| |
|
|
| T |
5451 |
atcaaaggttgttgttgagacatttgcttgcattggaacattagctacttcagcattaggcactttgtagtgatagtagctatttgcatcaccttgttgg |
5352 |
T |
|
| Q |
104 |
gcatagaaattttgatccatttga |
127 |
Q |
| |
|
|| | |||||||||||||||||| |
|
|
| T |
5351 |
ccaaataaattttgatccatttga |
5328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 5601 - 5722
Alignment:
| Q |
4 |
atcaaagcttgttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgttgc |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||| ||||||||| || | |||||||| |
|
|
| T |
5601 |
atcaaaggttgttgttgagacatttgcttgcattggaaccttagctacttcaccattaggcactttgtagtgatagtagctatttccatcaccttgttgg |
5700 |
T |
|
| Q |
104 |
gcatagaaattttgatccattt |
125 |
Q |
| |
|
|| |||||||||| ||||||| |
|
|
| T |
5701 |
ccaaagaaattttggtccattt |
5722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 380
Target Start/End: Original strand, 5899 - 6043
Alignment:
| Q |
233 |
tgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttc |
332 |
Q |
| |
|
||||||||| || ||||| |||| | |||| | ||||||||||||| | |||||| ||||||||||||| || ||||| | ||||||||||||| |
|
|
| T |
5899 |
tgaacacttccagggtagatttgacgttgcatgctttgattaacaccgtaatttggaatcatagtactcatgttg---ttcttctcctgttgaacacttg |
5995 |
T |
|
| Q |
333 |
cagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaa |
380 |
Q |
| |
|
|| |||||||||| | |||||| ||||||| ||||| ||| |||||| |
|
|
| T |
5996 |
catggtagatttgatggtgcatgttttgattaacaccatgagttggaa |
6043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 156; Significance: 9e-83; HSPs: 4)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 153 - 405
Target Start/End: Complemental strand, 47182 - 46924
Alignment:
| Q |
153 |
gagttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||||| || ||||||||||||| || ||||||||||||||| |
|
|
| T |
47182 |
gagttgcaaccatgttcataactggcattaaagtactcatcgttgaagtattcatcatggtgttactgttctgttgttgattaaaacttgaagtgtagac |
47083 |
T |
|
| Q |
253 |
ttgaggatgcaagt------tttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccagtgtagatttga |
346 |
Q |
| |
|
||||| |||| || |||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
47082 |
ttgagactgcatgtgcatgttttgattaacactaggagttggaaccatagtactcacgatgatgttcttgtattgttgaacacttccagggtagatttga |
46983 |
T |
|
| Q |
347 |
cgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctc |
405 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46982 |
cgttgcatgctttgattaacaccgtgatttggaatcatggtactcatgttgttcttctc |
46924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 348
Target Start/End: Original strand, 47836 - 48039
Alignment:
| Q |
154 |
agttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagact |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
47836 |
agttgcaaccatgttcataactggcattaaagtaatcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagcgtagact |
47935 |
T |
|
| Q |
254 |
tgag---------gatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccagtgtagattt |
344 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||| || ||||||| |
|
|
| T |
47936 |
tgagactgctgcatgtgcatgttttgattaacactaggagttggaaccataatactcacgatggtgttcttgttttgttgaacacttacaagctagattt |
48035 |
T |
|
| Q |
345 |
gacg |
348 |
Q |
| |
|
|||| |
|
|
| T |
48036 |
gacg |
48039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 47294 - 47181
Alignment:
| Q |
14 |
gttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgttgcgcatagaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| | | |||||||| ||| ||||| |
|
|
| T |
47294 |
gttgttgagacatttgcttgcattggaacattagctacttcagcattaggcactttgtagtgattatagctatttttatcaccttgttggccattgaaat |
47195 |
T |
|
| Q |
114 |
tttgatccatttga |
127 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
47194 |
tttggtccatttga |
47181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 47745 - 47800
Alignment:
| Q |
35 |
attggaacattagctacttcagcattacgcactttgtagttataatagctatttgc |
90 |
Q |
| |
|
||||||| ||||||||||| || |||| |||||||||||| |||||| |||||||| |
|
|
| T |
47745 |
attggaaaattagctactttagaattaggcactttgtagtgataataactatttgc |
47800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 189 - 404
Target Start/End: Original strand, 9153 - 9374
Alignment:
| Q |
189 |
tcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttga----ggatg--caagttttgattaacaccagg |
282 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||| || |||||||||||||| ||| |
|
|
| T |
9153 |
tcatcgttgaagtattcatcatggtgttgctcttctgttcttgattaacacttgaagtgtagacttgaaactgcatgtgcatgttttgattaacactagg |
9252 |
T |
|
| Q |
283 |
agttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | |||||||||||||| ||||||| |||||||||| |
|
|
| T |
9253 |
agttggaaccatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacaccgtaatttggaatc |
9352 |
T |
|
| Q |
383 |
atagtactcatgttgttcttct |
404 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9353 |
atagtactcatgttgttcttct |
9374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 153 - 405
Target Start/End: Complemental strand, 8694 - 8436
Alignment:
| Q |
153 |
gagttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||| |||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
8694 |
gagttgcaaccatgttcataactggcattaatacactcatcgttgaagtattcatcatggttttgctcttttgttgttgattaacacttgaggtgtagac |
8595 |
T |
|
| Q |
253 |
ttgaggatgcaagt------tttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttccagtgtagatttga |
346 |
Q |
| |
|
||||| |||| || ||||||| |||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||| || || ||||||| |
|
|
| T |
8594 |
ttgagactgcatgtgcatgttttgatttacactaggagtttgaaccatagtactcacaatggtgttcttgttttgttgaacacttctagggttgatttga |
8495 |
T |
|
| Q |
347 |
cgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctc |
405 |
Q |
| |
|
|| |||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8494 |
cgttgcatgctttaattaacaccgtgatttagaatcatagtattcatgttgttcttctc |
8436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 9016 - 9137
Alignment:
| Q |
4 |
atcaaagcttgttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgttgc |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||| | |||||||| |
|
|
| T |
9016 |
atcaaaggttgttgttgagacatttgcttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagctatttgcatcaccttgttgg |
9115 |
T |
|
| Q |
104 |
gcatagaaattttgatccattt |
125 |
Q |
| |
|
|| |||||||||| ||||||| |
|
|
| T |
9116 |
ccaaagaaattttggtccattt |
9137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 8808 - 8693
Alignment:
| Q |
12 |
ttgttgttgagacatttgcttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatttgcacccccttgttgcgcatagaa |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| ||| ||||||||| | | |||||||| || | || |
|
|
| T |
8808 |
ttgttgttgagacattttcttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagctatttccttcaccttgttggccaaataa |
8709 |
T |
|
| Q |
112 |
attttgatccatttga |
127 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
8708 |
attttgattcatttga |
8693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 371
Target Start/End: Original strand, 9293 - 9428
Alignment:
| Q |
233 |
tgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacacttc |
332 |
Q |
| |
|
||||||||| || ||||| |||| | |||| | ||||||||||||| | |||||| ||||||||||||| || ||||| | ||||||||||||| |
|
|
| T |
9293 |
tgaacacttccagggtagatttgaagttgcatgctttgattaacaccgtaatttggaatcatagtactcatgttg---ttcttctactgttgaacacttg |
9389 |
T |
|
| Q |
333 |
cagtgtagatttgacgatgcatgctttgattgacaccgt |
371 |
Q |
| |
|
|| |||||||||| | |||||| ||||||| ||||||| |
|
|
| T |
9390 |
catggtagatttgatggtgcatgttttgattaacaccgt |
9428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 281
Target Start/End: Complemental strand, 2589646 - 2589450
Alignment:
| Q |
82 |
gctatttgcacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatacgggagttgcaaccatgttcataactggcatt |
181 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| || ||||||||| | |||||||||||||||||| | ||||| | || |||||| ||||||||| |
|
|
| T |
2589646 |
gctatttgcatccccttgttgatcatagaaattctgctccatttgaggttgcatgttttggttaaatccaggagtaggaatcatgttgctaactggcaaa |
2589547 |
T |
|
| Q |
182 |
gaattactcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccag |
281 |
Q |
| |
|
||| |||| ||||| || ||||||||||||||| ||||||||| ||| || ||| |||||||||||| |||||| || || ||||| ||| |||||| |
|
|
| T |
2589546 |
gaagtacttatcatggaagtattcatcatggtgctgctcttcttctgt---tgtacagttgaagtgtagatttgaggctgaaaattttggttatcaccag |
2589450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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