View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9136_low_4 (Length: 366)
Name: NF9136_low_4
Description: NF9136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9136_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 9778915 - 9778583
Alignment:
| Q |
19 |
aattaaccgaaattaccttctgaattggacgaacatatccaatgttcgccttgcgaaagatgaactagttgaatgacctccatctaattttaaagcattt |
118 |
Q |
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| T |
9778915 |
aatttaccgaaattaccttctgaattggacgaacatatccaatgttcgccttgcgaaagatgaactagttgaatgacctccatctaattttaaagcattt |
9778816 |
T |
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| Q |
119 |
tctcttccaataaaaacaatgctcttccccgccaaagcttccaaatctaaatatcatccaaacatttcgcctaccaacgtgtttttggacaatgaaatca |
218 |
Q |
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| T |
9778815 |
tctctttcaataaaaacaatgctcttccccgccaaagcttccaaatctaagtatcatccaaacatttcacctaccaacgtgtttttggacaatgaaatca |
9778716 |
T |
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| Q |
219 |
agaatagcctagaaaaattatgtctaagtggtgtatcatccacccaagagtcattccaaaatgaagaaatttccctatcaccaactcttttccgcaacnn |
318 |
Q |
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| T |
9778715 |
agaatagcctagaaaaattatgtctaagtggtgtatcatccacccaagagtcattccaaaatgaagaaatttccctatcaccaactattttccgcaacaa |
9778616 |
T |
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| Q |
319 |
nnnnnntgaactaaatcaaatttgggttctctg |
351 |
Q |
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| T |
9778615 |
aaaaaatgaactaaatcaaatttgggttctctg |
9778583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 9790768 - 9790655
Alignment:
| Q |
203 |
ttggacaatgaaatcaagaatagcctagaaaaattatgtctaagtggtgtatcatccacccaagagtcattccaaaatgaagaaatttccctatcaccaa |
302 |
Q |
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| T |
9790768 |
ttggacaatgaaatcaagaatagcctagaaatattaactctaagtggtatatcaaccccgcatgtgccattccaaaatcaagaattttccccattacaaa |
9790669 |
T |
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| Q |
303 |
ctcttttccgcaac |
316 |
Q |
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| T |
9790668 |
cccttttccgcaac |
9790655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 9790890 - 9790814
Alignment:
| Q |
89 |
gaatgacctccatctaattttaaagcattttctcttccaataaaaacaatgctcttccccgccaaagcttccaaatc |
165 |
Q |
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|||||||||||||| ||||| |||| ||| ||||||| ||||||||||||||| || || ||||||||||||| |
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| T |
9790890 |
gaatgacctccatcaaatttgaaagaattccctcttccttcgaaaacaatgctcttcgccaccgaagcttccaaatc |
9790814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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