View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9136_low_7 (Length: 319)
Name: NF9136_low_7
Description: NF9136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9136_low_7 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 14784224 - 14783890
Alignment:
| Q |
6 |
agaagcagagacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatttcagatgag |
105 |
Q |
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| T |
14784224 |
agaagcagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatttcagatgag |
14784125 |
T |
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| Q |
106 |
cagaaggtatattttaatatgcatgggttctctattttaatattttaatatgcattgttaatatgtgtgaagcacctttatgctaattttaatat----- |
200 |
Q |
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| T |
14784124 |
caaaaggtatattttaatatgcatgggttctctattttaatattttaatatgcattgttaatatgtgtgaagcacctttatgctaattttaatatgcatt |
14784025 |
T |
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| Q |
201 |
----------------gcataatgttctctannnnnnngtaatatttgtttaccattggtaattatcttagggtttggttccggcaattcaaaaccttgg |
284 |
Q |
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| T |
14784024 |
gttaatattttaatatgcataatgttctctatttttttgtaatatttgtttaccattggtaattatcttagggtttggttccggcaattcaaaaccttgg |
14783925 |
T |
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| Q |
285 |
tagtcatgtagagcataggctatgtgtgaagcacc |
319 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
14783924 |
tagtcatgtagagcataggctatgtgtgaagcacc |
14783890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 14783904 - 14783874
Alignment:
| Q |
167 |
tatgtgtgaagcacctttatgctaattttaa |
197 |
Q |
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| T |
14783904 |
tatgtgtgaagcacctttatgctaattttaa |
14783874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 29193749 - 29193875
Alignment:
| Q |
191 |
attttaatatgcataatgttctctannnnnnngtaatatttgtttaccattggtaattatcttagggtttggttccggcaattcaaaaccttggtagtca |
290 |
Q |
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| T |
29193749 |
attttaatatgcataatgttctctatttttttgtaatatttgtttaccattggtaattatcttagggtttggttccggcaattcaaaaccttggtagtca |
29193848 |
T |
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| Q |
291 |
tgtagagcataggctatgtgtgaagca |
317 |
Q |
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| T |
29193849 |
tgtagagcataggctatgtgtgaagca |
29193875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 29193619 - 29193721
Alignment:
| Q |
11 |
cagagacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatttcagatgagcagaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||| |
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| T |
29193619 |
cagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaaacaatatgcattcatctcaaatgagctgaa |
29193718 |
T |
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| Q |
111 |
ggt |
113 |
Q |
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||| |
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| T |
29193719 |
ggt |
29193721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 191 - 319
Target Start/End: Complemental strand, 33366150 - 33366022
Alignment:
| Q |
191 |
attttaatatgcataatgttctctannnnnnngtaatatttgtttaccattggtaattatcttagggtttggttccggcaattcaaaaccttggtagtca |
290 |
Q |
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| T |
33366150 |
attttaatatgcataatgttctctatttttttgtaatatttgtttaccattggtaattatcttagggtttggttccggcaattcaaaaccttggtagtca |
33366051 |
T |
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| Q |
291 |
tgtagagcataggctatgtgtgaagcacc |
319 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
33366050 |
tgttgagcataggctatgtgtgaagcacc |
33366022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 33366283 - 33366173
Alignment:
| Q |
6 |
agaagcagagacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatttcagatgag |
105 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33366283 |
agaagcagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatctcagatgaa |
33366184 |
T |
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| Q |
106 |
cagaaggtata |
116 |
Q |
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| T |
33366183 |
cagaaggtata |
33366173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 33366036 - 33366006
Alignment:
| Q |
167 |
tatgtgtgaagcacctttatgctaattttaa |
197 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33366036 |
tatgtgtgaagcacctttatgctaattttaa |
33366006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 33573293 - 33573403
Alignment:
| Q |
6 |
agaagcagagacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatttcagatgag |
105 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
33573293 |
agaagcagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatctcagataag |
33573392 |
T |
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| Q |
106 |
cagaaggtata |
116 |
Q |
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||||||||||| |
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| T |
33573393 |
cagaaggtata |
33573403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 33573457 - 33573553
Alignment:
| Q |
223 |
gtaatatttgtttaccattggtaattatcttagggtttggttccggcaattcaaaaccttggtagtcatgtagagcataggctatgtgtgaagcacc |
319 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33573457 |
gtaatatttgtttaccattgctaattatcttagggtttggttccggcaattcaaaaccttggtagtcatgtagagcataggctatgtgtgaagcacc |
33573553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 33573539 - 33573569
Alignment:
| Q |
167 |
tatgtgtgaagcacctttatgctaattttaa |
197 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33573539 |
tatgtgtgaagcacctttatgctaattttaa |
33573569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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