View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9137_high_2 (Length: 278)
Name: NF9137_high_2
Description: NF9137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9137_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 10715337 - 10715094
Alignment:
| Q |
17 |
cacagactgaaagttactagcattaaagtttatcttactccattgcattgcacccttccaaataacctcataatactcacaagcgaagaaaagatgaaaa |
116 |
Q |
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| T |
10715337 |
cacagactgaaagttactagcattaaagtttatcttactccattgcattgcacccttccaaataacctcataatactcacaagcgaagaaaagatgaaaa |
10715238 |
T |
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| Q |
117 |
tggaattcattctccttttcacactaaatgcatgattggtcatattgtatttctaatttactcagtatgtctcacaagttggcaatctaccatatatagc |
216 |
Q |
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| T |
10715237 |
tggaattcattctccttttcacactaaatgcatgattggtcatattgtatttcaaatttactcagtatgtctcacaagttggcaatctaccatatatagc |
10715138 |
T |
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| Q |
217 |
ttgtctaataacaaacaatcattttggaggagtaaggttattac |
260 |
Q |
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| T |
10715137 |
ttgtctaataacaaacaatcattttggaggagtaaggttattac |
10715094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 39790253 - 39790320
Alignment:
| Q |
192 |
aagttggcaatctaccatatatagcttgtctaataacaaacaatcattttggaggagtaaggttatta |
259 |
Q |
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| T |
39790253 |
aagttggtaatctaccatatatagccagccagataacaaacaaacattttggaggagcagggttatta |
39790320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 7478257 - 7478329
Alignment:
| Q |
188 |
tcacaagttggcaatctaccatatatagcttgtctaataacaaacaatcattttggaggagtaaggttattac |
260 |
Q |
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| T |
7478257 |
tcacaagttggcaatctaccatgaatagctagccaaataacaaacaaacattttggaggagcagggttattac |
7478329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 29456693 - 29456761
Alignment:
| Q |
192 |
aagttggcaatctaccatatatagcttgtctaataacaaacaatcattttggaggagtaaggttattac |
260 |
Q |
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| T |
29456693 |
aagttggcaatctaccatgtatagctagccaagaaacaaacaaacaatttggaggagcaagattattac |
29456761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 6839779 - 6839551
Alignment:
| Q |
30 |
ttactagcattaaagtttatcttactccattgcattgcacccttccaaataacctcataatactcacaagcgaagaaaagatgaaaatggaattcattct |
129 |
Q |
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| T |
6839779 |
ttactagtattagcgttcatgttactacattgcgttgcacctttccaaacaatcttagaaaactcacaagtgaagaaaagatgagaatgagtttcattct |
6839680 |
T |
|
| Q |
130 |
ccttttcacactaaatgcatgattggtcatattgtatttctaatttactcagtatgtctcacaagttggcaatctaccatatatagcttgtctaataaca |
229 |
Q |
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| |||| ||| || |||| ||||| || ||||||| || |||||||||| | | ||||||||||| |||||| ||| |||||| | | | ||||| |
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| T |
6839679 |
cttttttgcacaaagtgcacaattgggcacattgtatctcaaatttactca--acctatcacaagttggtaatctatcatgtatagccagccaagtaaca |
6839582 |
T |
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| Q |
230 |
aacaatcattttggaggagtaaggttattac |
260 |
Q |
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|| || |||||||||||| | ||||||||| |
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| T |
6839581 |
aataaatattttggaggagcatggttattac |
6839551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 1161370 - 1161302
Alignment:
| Q |
192 |
aagttggcaatctaccatatatagcttgtctaataacaaacaatcattttggaggagtaaggttattac |
260 |
Q |
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| T |
1161370 |
aagttggcaatctaccatgaatagctagccaagtaacaaacaaacattttggaggggcagggttattac |
1161302 |
T |
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