View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9137_low_1 (Length: 534)
Name: NF9137_low_1
Description: NF9137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9137_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 337 - 518
Target Start/End: Complemental strand, 16645006 - 16644825
Alignment:
| Q |
337 |
ctcactagtttcgtaattttaacaatgtaatatgttactactacttactagtgtagtggatgcaactctaaactgcactagcattcgtgccctttacagg |
436 |
Q |
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| T |
16645006 |
ctcactagtttcgtatttttaacaatgtaatatgttactactacttactagtgtagtggatgcaactctaaaatgcactagcattcgttctctttacagg |
16644907 |
T |
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| Q |
437 |
catgaaaatatatatagtagttgtaagtatttacgagattcagccctctctttcaacaactaaaaaagaatcttttcatctg |
518 |
Q |
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| T |
16644906 |
catgaaaaaatatatagtagttgtaagtatttacgagattcagccctctctttcaacaactaaaaaagaatcttttcatctg |
16644825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 119 - 262
Target Start/End: Complemental strand, 16645213 - 16645070
Alignment:
| Q |
119 |
ggaattagagagtgatacagtgaccaaaaggatcattcgtgacaacataatttcaaatggtgaaacagctcaagctcctaatgatgtattggctttctct |
218 |
Q |
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| T |
16645213 |
ggaattagagaatgacacagtgaccaaaaggatcattcgtgacaacataatttcaaatggtgaaacagctcaagctcctaatgatgtattggctttctct |
16645114 |
T |
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| Q |
219 |
cgatcagttcataaagttgattcctcactcgaatgatccatgta |
262 |
Q |
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| T |
16645113 |
cgatcagttcataaagttgattcctcactcgaatgattcatgta |
16645070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 16645306 - 16645261
Alignment:
| Q |
17 |
acatcaagaaaggaaagagcaagtagaaaatgaagagagcacaaga |
62 |
Q |
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| T |
16645306 |
acataaagaaaggaacgagcaagtagaaaaagaagagaacacaaga |
16645261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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