View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9137_low_3 (Length: 427)
Name: NF9137_low_3
Description: NF9137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9137_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 40383751 - 40384150
Alignment:
| Q |
12 |
gattattctaacacatgttctagcaaaagaacgaacagaacgtatcgaacttcttggatggatttgtgttgtcctctcaactagtgtttttgcagcacct |
111 |
Q |
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| T |
40383751 |
gattattctaacacatgttctagcaaaagaacgaacagaacgtatcgaacttcttggatggatttgtgttgtcctctcaactagtgtttttgcagcacct |
40383850 |
T |
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| Q |
112 |
ttaagcgttatggtacatattatataacaaaatttgcttaattcttctttattctttataactaccatgtgcttatgcatgaataatctttgttcaattt |
211 |
Q |
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| T |
40383851 |
ttaagcgttatggtacatattatataacaaaatttgcttaattcttctttattctttataactaccatgtgcttatgcatgaataatctttgttcaattt |
40383950 |
T |
|
| Q |
212 |
cagagagtggttattcgcaccaaaagtgttgagtttatgcctttcactctttcactcctcctcacaacaagtgcaattatatggctgtgctatggtattc |
311 |
Q |
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| T |
40383951 |
cagagagtggttattcgcaccaaaagtgttgagtttatgcctttcactctttcactcctcctcacaacaagtgcaattatatggctgtgctatggtattc |
40384050 |
T |
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| Q |
312 |
tcctcaaagatatatttgttacggtaagtactccaatttatccatgacaagcaattattttattccgggatatttatgctactataaaattgttgaatta |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40384051 |
tcctcaaagatatatttgttacggtaagtactccaatttatccatgacaagcaattattttattccgggatatttatgctactat-aaattgttgaatta |
40384149 |
T |
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