View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9137_low_5 (Length: 293)
Name: NF9137_low_5
Description: NF9137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9137_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 11320933 - 11321195
Alignment:
| Q |
18 |
cttcccttatccttttctctcaattcttctatacaatgcaacatttgccaatactttgattaatttcataacaaataaaatatagagtatgttagatttt |
117 |
Q |
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| T |
11320933 |
cttcctttatccttttctctcaattcttctatacaatgcaacatttgccaatattttgattaatttcataacaaataaaatatagagtatgttagatttt |
11321032 |
T |
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| Q |
118 |
aagatttagttaccaatttatttgtctatttatatttctttcaaatacacgtgtagtttccaaacctaccaactacaggatgcgatgactttaaggtggg |
217 |
Q |
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| T |
11321033 |
aagatttagttaccaatttatttgtctatttatttttctttcaaatacacgtgtagtttccaaacctaccaactacaggatgtgatgactttaaggtggg |
11321132 |
T |
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| Q |
218 |
aaagtctctctccctcttcatgtaatattgtctacacattttacccaagtgcgatagaattat |
280 |
Q |
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| T |
11321133 |
aaagtctctctccctcttcatgtaatattgtctacagattttacccaagtgcgatagaattat |
11321195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 34322531 - 34322600
Alignment:
| Q |
21 |
cccttatccttttctctcaattcttctatacaatgcaacatttgccaatactttgattaatttcataaca |
90 |
Q |
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| T |
34322531 |
cccttatctctttctctctactattctatacaatgcaacttttgataatacttttgttaatttcataaca |
34322600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 3170103 - 3170042
Alignment:
| Q |
31 |
tttctctcaattcttctatacaatgcaacatttgccaatac-tttgattaatttcataacaa |
91 |
Q |
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|||||||| | ||||||||||||| |||| |||| ||||| |||||||||||||||||||| |
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| T |
3170103 |
tttctctctactcttctatacaatacaacttttgataatacctttgattaatttcataacaa |
3170042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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